Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01485 and ECD_01486 are separated by 24 nucleotides ECD_01486 and ECD_01487 are separated by 120 nucleotides ECD_01487 and ECD_01488 overlap by 11 nucleotides ECD_01488 and ECD_01489 are separated by 219 nucleotides
ECD_01485: ECD_01485 - arabinose efflux transporter, arabinose-inducible, at 1,565,601 to 1,566,791
_01485
ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481
_01486
ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886
_01487
ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196
_01488
ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850
_01489
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-1
0
1 at 1566.291 kb on + strand, within ECD_01485 at 1566.939 kb on - strand, within ECD_01486 at 1567.065 kb on - strand, within ECD_01486 at 1567.334 kb on - strand, within ECD_01486 at 1567.429 kb on - strand at 1567.510 kb on + strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.646 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.662 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.957 kb on - strand, within ECD_01488 at 1567.967 kb on - strand, within ECD_01488 at 1568.197 kb on - strand at 1568.291 kb on - strand at 1568.412 kb on + strand at 1568.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,566,291 + ECD_01485 0.58 +0.6 1,566,939 - ECD_01486 0.18 -1.0 1,567,065 - ECD_01486 0.37 -0.3 1,567,334 - ECD_01486 0.78 -0.6 1,567,429 - -1.1 1,567,510 + +1.4 1,567,620 - -1.0 1,567,620 - -0.0 1,567,620 - +0.3 1,567,620 - +0.1 1,567,646 - ECD_01487 0.15 -0.6 1,567,654 - ECD_01487 0.18 +0.3 1,567,654 - ECD_01487 0.18 +0.1 1,567,654 - ECD_01487 0.18 +0.7 1,567,662 - ECD_01487 0.21 -0.8 1,567,678 - ECD_01487 0.27 -1.0 1,567,678 - ECD_01487 0.27 +0.3 1,567,957 - ECD_01488 0.25 +0.6 1,567,967 - ECD_01488 0.28 -0.5 1,568,197 - -1.6 1,568,291 - +0.6 1,568,412 + -0.6 1,568,412 + -0.5
Or see this region's nucleotide sequence