Strain Fitness in Escherichia coli BL21 around ECD_01388

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01386 and ECD_01387 overlap by 4 nucleotidesECD_01387 and ECD_01388 are separated by 302 nucleotidesECD_01388 and ECD_01390 are separated by 591 nucleotides ECD_01386: ECD_01386 - potassium-tellurite ethidium and proflavin transporter, at 1,454,635 to 1,455,627 _01386 ECD_01387: ECD_01387 - tellurite, selenium methyltransferase, SAM-dependent; tellurite, selenium resistance protein, at 1,455,624 to 1,456,217 _01387 ECD_01388: ECD_01388 - lipoprotein, at 1,456,520 to 1,457,188 _01388 ECD_01390: ECD_01390 - IS609 transposase B, at 1,457,780 to 1,458,928 _01390 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -1 0 1at 1456.666 kb on + strand, within ECD_01388at 1456.905 kb on + strand, within ECD_01388at 1456.981 kb on + strand, within ECD_01388at 1457.208 kb on - strandat 1457.358 kb on - strandat 1457.385 kb on - strandat 1457.487 kb on - strandat 1457.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,456,666 + ECD_01388 0.22 -1.4
1,456,905 + ECD_01388 0.58 -0.7
1,456,981 + ECD_01388 0.69 -1.0
1,457,208 - -0.8
1,457,358 - +0.6
1,457,385 - +0.1
1,457,487 - +0.3
1,457,558 - +0.6

Or see this region's nucleotide sequence