Strain Fitness in Escherichia coli BL21 around ECD_01256

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01255 and ECD_01256 are separated by 148 nucleotidesECD_01256 and ECD_01257 are separated by 6 nucleotides ECD_01255: ECD_01255 - phosphatidylglycerophosphatase B, at 1,325,700 to 1,326,464 _01255 ECD_01256: ECD_01256 - DUF1049 family inner membrane protein, function unknown, at 1,326,613 to 1,326,921 _01256 ECD_01257: ECD_01257 - LPS regulatory protein; putative modulator of LpxC proteolysis, at 1,326,928 to 1,328,097 _01257 Position (kb) 1326 1327Strain fitness (log2 ratio) -1 0 1at 1325.667 kb on + strandat 1326.135 kb on + strand, within ECD_01255at 1326.263 kb on + strand, within ECD_01255at 1326.340 kb on + strand, within ECD_01255at 1326.340 kb on + strand, within ECD_01255at 1326.340 kb on + strand, within ECD_01255at 1326.344 kb on + strand, within ECD_01255at 1326.345 kb on - strand, within ECD_01255at 1326.702 kb on + strand, within ECD_01256

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
1,325,667 + +0.4
1,326,135 + ECD_01255 0.57 +1.4
1,326,263 + ECD_01255 0.74 +0.7
1,326,340 + ECD_01255 0.84 -0.2
1,326,340 + ECD_01255 0.84 -0.4
1,326,340 + ECD_01255 0.84 -0.1
1,326,344 + ECD_01255 0.84 +0.5
1,326,345 - ECD_01255 0.84 -0.8
1,326,702 + ECD_01256 0.29 +0.3

Or see this region's nucleotide sequence