Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01248 and ECD_01249 are separated by 35 nucleotides ECD_01249 and ECD_01250 are separated by 379 nucleotides ECD_01250 and ECD_01251 are separated by 209 nucleotides
ECD_01248: ECD_01248 - inner membrane protein, S49 peptidase family protein, at 1,315,702 to 1,316,751
_01248
ECD_01249: ECD_01249 - DUF2498 protein YciN, at 1,316,787 to 1,317,038
_01249
ECD_01250: ECD_01250 - DNA topoisomerase I, omega subunit, at 1,317,418 to 1,320,015
_01250
ECD_01251: ECD_01251 - N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor, at 1,320,225 to 1,321,199
_01251
Position (kb)
1317
1318
1319
1320
1321 Strain fitness (log2 ratio)
-1
0
1 at 1316.639 kb on + strand, within ECD_01248 at 1316.644 kb on + strand, within ECD_01248 at 1317.040 kb on - strand at 1317.043 kb on + strand at 1317.177 kb on + strand at 1317.178 kb on - strand at 1317.404 kb on + strand at 1319.722 kb on + strand, within ECD_01250 at 1319.722 kb on + strand, within ECD_01250 at 1319.889 kb on + strand at 1320.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,316,639 + ECD_01248 0.89 +0.3 1,316,644 + ECD_01248 0.90 -0.2 1,317,040 - -0.3 1,317,043 + +0.5 1,317,177 + +0.4 1,317,178 - +0.2 1,317,404 + -0.7 1,319,722 + ECD_01250 0.89 -1.3 1,319,722 + ECD_01250 0.89 -0.5 1,319,889 + -0.3 1,320,159 + +0.6
Or see this region's nucleotide sequence