Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01237 and ECD_01238 overlap by 1 nucleotides ECD_01238 and ECD_01239 are separated by 91 nucleotides ECD_01239 and ECD_01240 are separated by 137 nucleotides
ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976
_01237
ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538
_01238
ECD_01239: ECD_01239 - trp operon leader peptide, at 1,308,630 to 1,308,674
_01239
ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693
_01240
Position (kb)
1306
1307
1308
1309 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1306.112 kb on + strand, within ECD_01237 at 1306.165 kb on + strand, within ECD_01237 at 1306.396 kb on - strand, within ECD_01237 at 1306.527 kb on - strand, within ECD_01237 at 1306.779 kb on - strand, within ECD_01237 at 1306.857 kb on + strand at 1306.934 kb on - strand at 1306.934 kb on - strand at 1306.938 kb on - strand at 1307.228 kb on + strand, within ECD_01238 at 1307.244 kb on - strand, within ECD_01238 at 1307.598 kb on + strand, within ECD_01238 at 1307.599 kb on - strand, within ECD_01238 at 1307.599 kb on - strand, within ECD_01238 at 1307.664 kb on + strand, within ECD_01238 at 1307.664 kb on + strand, within ECD_01238 at 1307.695 kb on - strand, within ECD_01238 at 1307.895 kb on - strand, within ECD_01238 at 1308.355 kb on + strand, within ECD_01238 at 1308.617 kb on + strand at 1308.752 kb on + strand at 1308.840 kb on - strand at 1309.084 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.351 kb on - strand, within ECD_01240
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,306,112 + ECD_01237 0.46 -0.5 1,306,165 + ECD_01237 0.49 -2.7 1,306,396 - ECD_01237 0.64 +0.3 1,306,527 - ECD_01237 0.72 +0.1 1,306,779 - ECD_01237 0.88 +0.1 1,306,857 + -1.2 1,306,934 - -0.3 1,306,934 - -0.5 1,306,938 - -0.7 1,307,228 + ECD_01238 0.16 -0.7 1,307,244 - ECD_01238 0.17 -0.2 1,307,598 + ECD_01238 0.40 -0.2 1,307,599 - ECD_01238 0.40 -1.8 1,307,599 - ECD_01238 0.40 -0.7 1,307,664 + ECD_01238 0.44 -0.9 1,307,664 + ECD_01238 0.44 +0.1 1,307,695 - ECD_01238 0.46 -0.9 1,307,895 - ECD_01238 0.59 +0.1 1,308,355 + ECD_01238 0.88 -0.0 1,308,617 + -0.7 1,308,752 + -0.7 1,308,840 - -0.5 1,309,084 + ECD_01240 0.31 +0.1 1,309,179 + ECD_01240 0.42 +0.3 1,309,179 + ECD_01240 0.42 +1.8 1,309,351 - ECD_01240 0.61 -0.5
Or see this region's nucleotide sequence