Strain Fitness in Escherichia coli BL21 around ECD_01230

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01229 and ECD_01230 are separated by 356 nucleotidesECD_01230 and ECD_01231 are separated by 59 nucleotidesECD_01231 and ECD_01232 are separated by 45 nucleotides ECD_01229: ECD_01229 - UPF0259 family inner membrane protein, at 1,298,512 to 1,299,255 _01229 ECD_01230: ECD_01230 - outer membrane protein W, at 1,299,612 to 1,300,250 _01230 ECD_01231: ECD_01231 - putative rubrerythrin/ferritin-like metal-binding protein, at 1,300,310 to 1,300,816 _01231 ECD_01232: ECD_01232 - putative rubrerythrin/ferritin-like metal-binding protein, at 1,300,862 to 1,301,362 _01232 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -2 -1 0 1at 1298.719 kb on - strand, within ECD_01229at 1298.951 kb on - strand, within ECD_01229at 1299.695 kb on + strand, within ECD_01230at 1299.744 kb on - strand, within ECD_01230at 1299.810 kb on - strand, within ECD_01230

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,298,719 - ECD_01229 0.28 +0.5
1,298,951 - ECD_01229 0.59 +0.3
1,299,695 + ECD_01230 0.13 -2.5
1,299,744 - ECD_01230 0.21 -1.7
1,299,810 - ECD_01230 0.31 -0.3

Or see this region's nucleotide sequence