Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01178 and ECD_01179 are separated by 116 nucleotides ECD_01179 and ECD_01180 are separated by 277 nucleotides ECD_01180 and ECD_01181 are separated by 54 nucleotides
ECD_01178: ECD_01178 - catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated, at 1,244,869 to 1,245,960
_01178
ECD_01179: ECD_01179 - peptidyl-tRNA hydrolase, at 1,246,077 to 1,246,661
_01179
ECD_01180: ECD_01180 - DUF2583 family putative inner membrane protein, at 1,246,939 to 1,247,217
_01180
ECD_01181: ECD_01181 - C4-dicarboxylic acid transporter, at 1,247,272 to 1,248,951
_01181
Position (kb)
1246
1247
1248 Strain fitness (log2 ratio)
-1
0
1 at 1246.078 kb on + strand at 1246.755 kb on - strand at 1246.802 kb on + strand at 1246.855 kb on + strand at 1246.876 kb on + strand at 1246.887 kb on + strand at 1246.938 kb on + strand at 1247.046 kb on + strand, within ECD_01180 at 1247.211 kb on + strand at 1247.274 kb on - strand at 1247.594 kb on - strand, within ECD_01181 at 1247.619 kb on + strand, within ECD_01181 at 1247.620 kb on - strand, within ECD_01181 at 1248.045 kb on + strand, within ECD_01181
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,246,078 + +0.9 1,246,755 - +1.1 1,246,802 + +0.8 1,246,855 + +1.1 1,246,876 + -0.4 1,246,887 + -0.3 1,246,938 + +1.1 1,247,046 + ECD_01180 0.38 -0.7 1,247,211 + +0.2 1,247,274 - -1.3 1,247,594 - ECD_01181 0.19 -0.2 1,247,619 + ECD_01181 0.21 -0.8 1,247,620 - ECD_01181 0.21 -0.6 1,248,045 + ECD_01181 0.46 +0.1
Or see this region's nucleotide sequence