Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01074 and ECD_01075 are separated by 52 nucleotides ECD_01075 and ECD_01076 are separated by 11 nucleotides
ECD_01074: ECD_01074 - flagellar component of cell-distal portion of basal-body rod, at 1,137,296 to 1,138,078
_01074
ECD_01075: ECD_01075 - flagellar protein of basal-body outer-membrane L ring, at 1,138,131 to 1,138,829
_01075
ECD_01076: ECD_01076 - putative flagellar basal body protein, at 1,138,841 to 1,139,938
_01076
Position (kb) 1138
1139 Strain fitness (log2 ratio) -1
0
1 at 1137.134 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.147 kb on + strand at 1137.147 kb on + strand at 1137.147 kb on + strand at 1137.260 kb on + strand at 1137.295 kb on + strand at 1137.385 kb on + strand, within ECD_01074 at 1137.510 kb on + strand, within ECD_01074 at 1137.635 kb on + strand, within ECD_01074 at 1137.735 kb on + strand, within ECD_01074 at 1137.739 kb on + strand, within ECD_01074 at 1137.947 kb on + strand, within ECD_01074 at 1138.027 kb on + strand at 1138.151 kb on + strand at 1138.151 kb on + strand at 1138.155 kb on + strand at 1138.155 kb on + strand at 1138.308 kb on + strand, within ECD_01075 at 1138.308 kb on + strand, within ECD_01075 at 1138.430 kb on + strand, within ECD_01075 at 1138.451 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.556 kb on + strand, within ECD_01075 at 1138.749 kb on + strand, within ECD_01075 at 1138.764 kb on + strand at 1138.827 kb on + strand at 1138.863 kb on + strand at 1139.026 kb on + strand, within ECD_01076 at 1139.029 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.082 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.296 kb on + strand, within ECD_01076 at 1139.593 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.685 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,137,134 + -0.1 1,137,145 + +0.4 1,137,145 + -0.3 1,137,145 + -1.4 1,137,145 + +0.0 1,137,147 + +0.5 1,137,147 + -0.7 1,137,147 + +0.4 1,137,260 + +0.2 1,137,295 + +0.3 1,137,385 + ECD_01074 0.11 -0.3 1,137,510 + ECD_01074 0.27 +0.3 1,137,635 + ECD_01074 0.43 -0.9 1,137,735 + ECD_01074 0.56 +0.3 1,137,739 + ECD_01074 0.57 +0.6 1,137,947 + ECD_01074 0.83 +1.1 1,138,027 + +0.1 1,138,151 + -0.3 1,138,151 + +0.0 1,138,155 + +0.9 1,138,155 + +0.1 1,138,308 + ECD_01075 0.25 -0.4 1,138,308 + ECD_01075 0.25 -0.0 1,138,430 + ECD_01075 0.43 -0.5 1,138,451 + ECD_01075 0.46 -0.6 1,138,556 + ECD_01075 0.61 -0.5 1,138,556 + ECD_01075 0.61 +0.2 1,138,556 + ECD_01075 0.61 +0.2 1,138,749 + ECD_01075 0.88 -0.2 1,138,764 + -0.9 1,138,827 + +0.1 1,138,863 + +0.4 1,139,026 + ECD_01076 0.17 +0.1 1,139,029 + ECD_01076 0.17 +0.2 1,139,074 + ECD_01076 0.21 +0.1 1,139,074 + ECD_01076 0.21 -0.3 1,139,082 + ECD_01076 0.22 -0.6 1,139,197 + ECD_01076 0.32 +0.3 1,139,197 + ECD_01076 0.32 +0.8 1,139,197 + ECD_01076 0.32 +0.2 1,139,240 + ECD_01076 0.36 +0.0 1,139,240 + ECD_01076 0.36 -1.0 1,139,240 + ECD_01076 0.36 +0.5 1,139,296 + ECD_01076 0.41 +0.1 1,139,593 + ECD_01076 0.68 +1.1 1,139,605 + ECD_01076 0.70 -0.1 1,139,605 + ECD_01076 0.70 +0.2 1,139,685 + ECD_01076 0.77 +0.5 1,139,805 + ECD_01076 0.88 -0.3 1,139,805 + ECD_01076 0.88 +0.8
Or see this region's nucleotide sequence