Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01044 and ECD_01045 are separated by 393 nucleotides ECD_01045 and ECD_01046 overlap by 8 nucleotides
ECD_01044: ECD_01044 - OPG biosynthetic transmembrane succinyltransferase, at 1,110,351 to 1,111,508
_01044
ECD_01045: ECD_01045 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase, at 1,111,902 to 1,113,437
_01045
ECD_01046: ECD_01046 - OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist, at 1,113,430 to 1,115,973
_01046
Position (kb)
1111
1112
1113
1114 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1111.404 kb on - strand at 1111.404 kb on - strand at 1111.509 kb on - strand at 1111.627 kb on + strand at 1111.666 kb on + strand at 1111.683 kb on - strand at 1111.838 kb on - strand at 1111.852 kb on + strand at 1112.185 kb on + strand, within ECD_01045 at 1112.657 kb on + strand, within ECD_01045 at 1112.700 kb on + strand, within ECD_01045 at 1113.171 kb on - strand, within ECD_01045 at 1113.194 kb on + strand, within ECD_01045 at 1113.414 kb on + strand at 1113.414 kb on + strand at 1113.421 kb on + strand at 1113.822 kb on + strand, within ECD_01046 at 1113.894 kb on + strand, within ECD_01046 at 1113.993 kb on + strand, within ECD_01046 at 1114.110 kb on + strand, within ECD_01046 at 1114.110 kb on + strand, within ECD_01046 at 1114.110 kb on + strand, within ECD_01046 at 1114.112 kb on + strand, within ECD_01046 at 1114.398 kb on + strand, within ECD_01046
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,111,404 - +0.7 1,111,404 - -0.7 1,111,509 - +0.9 1,111,627 + +0.2 1,111,666 + -0.1 1,111,683 - +0.4 1,111,838 - -0.9 1,111,852 + +1.1 1,112,185 + ECD_01045 0.18 -1.9 1,112,657 + ECD_01045 0.49 -2.6 1,112,700 + ECD_01045 0.52 -0.5 1,113,171 - ECD_01045 0.83 -0.9 1,113,194 + ECD_01045 0.84 -2.4 1,113,414 + -1.5 1,113,414 + -1.9 1,113,421 + +0.0 1,113,822 + ECD_01046 0.15 -3.2 1,113,894 + ECD_01046 0.18 -1.5 1,113,993 + ECD_01046 0.22 -1.9 1,114,110 + ECD_01046 0.27 -3.1 1,114,110 + ECD_01046 0.27 -2.0 1,114,110 + ECD_01046 0.27 -2.5 1,114,112 + ECD_01046 0.27 -0.5 1,114,398 + ECD_01046 0.38 -2.5
Or see this region's nucleotide sequence