Strain Fitness in Escherichia coli BL21 around ECD_01024

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01022 and ECD_01023 are separated by 49 nucleotidesECD_01023 and ECD_01024 are separated by 1 nucleotidesECD_01024 and ECD_01025 overlap by 8 nucleotides ECD_01022: ECD_01022 - ATP-binding protein; putative PhoH family P-loop ATPase, at 1,089,275 to 1,090,339 _01022 ECD_01023: ECD_01023 - biofilm PGA synthase PgaCD, regulatory subunit; c-di-GMP-stimulated activity and dimerization, at 1,090,389 to 1,090,802 _01023 ECD_01024: ECD_01024 - biofilm PGA synthase PgaCD, catalytic subunit; poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 1,090,804 to 1,092,129 _01024 ECD_01025: ECD_01025 - poly-beta-1,6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein, at 1,092,122 to 1,094,140 _01025 Position (kb) 1090 1091 1092 1093Strain fitness (log2 ratio) -2 -1 0 1at 1089.853 kb on + strand, within ECD_01022at 1089.853 kb on + strand, within ECD_01022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
1,089,853 + ECD_01022 0.54 -0.4
1,089,853 + ECD_01022 0.54 -1.8

Or see this region's nucleotide sequence