Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00991 and ECD_00992 are separated by 285 nucleotides ECD_00992 and ECD_00993 are separated by 173 nucleotides ECD_00993 and ECD_00994 overlap by 11 nucleotides ECD_00994 and ECD_00995 are separated by 47 nucleotides
ECD_00991: ECD_00991 - stress protein, member of the CspA-family, at 1,055,252 to 1,055,464
_00991
ECD_00992: ECD_00992 - cold shock protein-like protein, cold-inducible, at 1,055,750 to 1,055,962
_00992
ECD_00993: ECD_00993 - cold shock gene, at 1,056,136 to 1,056,366
_00993
ECD_00994: ECD_00994 - putative phosphatidylethanolamine synthesis regulator, at 1,056,356 to 1,056,529
_00994
ECD_00995: ECD_00995 - putative 4Fe-4S membrane protein, at 1,056,577 to 1,057,650
_00995
Position (kb)
1056
1057 Strain fitness (log2 ratio)
-1
0
1 at 1055.617 kb on + strand at 1055.960 kb on + strand at 1055.961 kb on - strand at 1055.972 kb on + strand at 1056.026 kb on + strand at 1056.026 kb on + strand at 1056.068 kb on + strand at 1056.124 kb on + strand at 1056.223 kb on - strand, within ECD_00993 at 1056.503 kb on + strand, within ECD_00994 at 1056.816 kb on + strand, within ECD_00995 at 1057.054 kb on - strand, within ECD_00995 at 1057.384 kb on + strand, within ECD_00995 at 1057.485 kb on - strand, within ECD_00995 at 1057.485 kb on - strand, within ECD_00995 at 1057.522 kb on - strand, within ECD_00995
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,055,617 + +0.0 1,055,960 + -0.4 1,055,961 - -0.1 1,055,972 + -0.2 1,056,026 + +0.4 1,056,026 + +0.1 1,056,068 + -0.7 1,056,124 + +1.3 1,056,223 - ECD_00993 0.38 +0.1 1,056,503 + ECD_00994 0.84 -0.6 1,056,816 + ECD_00995 0.22 +0.1 1,057,054 - ECD_00995 0.44 -0.0 1,057,384 + ECD_00995 0.75 -0.1 1,057,485 - ECD_00995 0.85 +1.4 1,057,485 - ECD_00995 0.85 +0.4 1,057,522 - ECD_00995 0.88 -0.3
Or see this region's nucleotide sequence