Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00976 and ECD_00977 are separated by 18 nucleotides ECD_00977 and ECD_00978 overlap by 4 nucleotides ECD_00978 and ECD_00979 overlap by 4 nucleotides ECD_00979 and ECD_00980 overlap by 4 nucleotides
ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136
_00976
ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862
_00977
ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446
_00978
ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841
_00979
ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695
_00980
Position (kb)
1040
1041
1042 Strain fitness (log2 ratio)
-1
0
1 at 1040.189 kb on - strand at 1040.309 kb on - strand, within ECD_00977 at 1040.309 kb on - strand, within ECD_00977 at 1040.317 kb on + strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.319 kb on + strand, within ECD_00977 at 1040.488 kb on + strand, within ECD_00977 at 1040.522 kb on + strand, within ECD_00977 at 1040.752 kb on + strand, within ECD_00977 at 1040.844 kb on + strand at 1040.971 kb on - strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1041.093 kb on + strand, within ECD_00978 at 1041.562 kb on - strand, within ECD_00979 at 1041.644 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.646 kb on + strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.647 kb on - strand, within ECD_00979 at 1041.770 kb on - strand, within ECD_00979 at 1042.098 kb on + strand, within ECD_00980 at 1042.341 kb on - strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.370 kb on + strand, within ECD_00980 at 1042.371 kb on - strand, within ECD_00980
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,040,189 - +0.3 1,040,309 - ECD_00977 0.22 -0.3 1,040,309 - ECD_00977 0.22 +0.4 1,040,317 + ECD_00977 0.23 -0.2 1,040,318 - ECD_00977 0.23 +0.7 1,040,318 - ECD_00977 0.23 -0.5 1,040,319 + ECD_00977 0.23 +1.1 1,040,488 + ECD_00977 0.47 -0.4 1,040,522 + ECD_00977 0.52 -0.1 1,040,752 + ECD_00977 0.84 -0.6 1,040,844 + -1.2 1,040,971 - ECD_00978 0.19 -0.2 1,040,993 + ECD_00978 0.23 -0.0 1,040,993 + ECD_00978 0.23 -0.4 1,041,093 + ECD_00978 0.40 -1.1 1,041,562 - ECD_00979 0.30 -1.7 1,041,644 + ECD_00979 0.50 +0.4 1,041,646 + ECD_00979 0.51 +0.3 1,041,646 + ECD_00979 0.51 +0.4 1,041,646 + ECD_00979 0.51 -1.3 1,041,647 - ECD_00979 0.51 +0.2 1,041,647 - ECD_00979 0.51 -0.3 1,041,647 - ECD_00979 0.51 -0.6 1,041,770 - ECD_00979 0.82 +0.1 1,042,098 + ECD_00980 0.30 -0.4 1,042,341 - ECD_00980 0.59 -0.1 1,042,370 + ECD_00980 0.62 +0.3 1,042,370 + ECD_00980 0.62 +0.9 1,042,370 + ECD_00980 0.62 -1.0 1,042,370 + ECD_00980 0.62 -0.1 1,042,371 - ECD_00980 0.62 -0.9
Or see this region's nucleotide sequence