Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00971 and ECD_00972 are separated by 94 nucleotides ECD_00972 and ECD_00973 overlap by 4 nucleotides ECD_00973 and ECD_00974 are separated by 90 nucleotides ECD_00974 and ECD_t00023 are separated by 206 nucleotides ECD_t00023 and ECD_00975 are separated by 426 nucleotides
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431
_00972
ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757
_00973
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
ECD_t00023: ECD_t00023 - tRNA-Ser, at 1,036,714 to 1,036,801
_t00023
ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346
_00975
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-1
0
1
2 at 1035.169 kb on + strand at 1035.935 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974 at 1036.435 kb on - strand, within ECD_00974 at 1036.439 kb on - strand, within ECD_00974 at 1036.463 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.475 kb on - strand at 1036.555 kb on - strand at 1036.645 kb on - strand at 1036.694 kb on - strand at 1036.694 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.711 kb on - strand at 1036.995 kb on - strand at 1037.070 kb on + strand at 1037.076 kb on + strand at 1037.076 kb on + strand at 1037.297 kb on + strand at 1037.298 kb on - strand at 1037.391 kb on + strand, within ECD_00975 at 1037.501 kb on - strand, within ECD_00975
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,035,169 + +0.7 1,035,935 - ECD_00974 0.13 -0.6 1,035,937 - ECD_00974 0.13 -0.0 1,035,937 - ECD_00974 0.13 +0.0 1,036,141 - ECD_00974 0.44 +1.8 1,036,141 - ECD_00974 0.44 +0.1 1,036,435 - ECD_00974 0.89 +0.3 1,036,439 - ECD_00974 0.90 +0.9 1,036,463 - +1.3 1,036,475 - +0.0 1,036,475 - -0.2 1,036,475 - -0.7 1,036,555 - +0.5 1,036,645 - +0.5 1,036,694 - -0.1 1,036,694 - -0.2 1,036,711 - +0.2 1,036,711 - -0.3 1,036,711 - +0.2 1,036,995 - -0.0 1,037,070 + +0.1 1,037,076 + +0.0 1,037,076 + -0.2 1,037,297 + +0.2 1,037,298 - -1.5 1,037,391 + ECD_00975 0.15 -0.7 1,037,501 - ECD_00975 0.24 +0.4
Or see this region's nucleotide sequence