Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00969 and ECD_00970 are separated by 44 nucleotides ECD_00970 and ECD_00971 are separated by 57 nucleotides ECD_00971 and ECD_00972 are separated by 94 nucleotides ECD_00972 and ECD_00973 overlap by 4 nucleotides ECD_00973 and ECD_00974 are separated by 90 nucleotides
ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448
_00969
ECD_00970: ECD_00970 - heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein, at 1,033,493 to 1,033,810
_00970
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431
_00972
ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757
_00973
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
Position (kb) 1033
1034
1035
1036 Strain fitness (log2 ratio) -1
0
1 at 1032.974 kb on + strand at 1033.137 kb on + strand, within ECD_00969 at 1033.304 kb on + strand, within ECD_00969 at 1033.495 kb on - strand at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.842 kb on - strand at 1033.842 kb on - strand at 1033.869 kb on + strand at 1033.900 kb on - strand at 1033.915 kb on - strand at 1034.104 kb on + strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.370 kb on + strand, within ECD_00971 at 1034.573 kb on - strand, within ECD_00971 at 1034.713 kb on + strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.755 kb on - strand, within ECD_00971 at 1035.169 kb on + strand at 1035.935 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,032,974 + +0.2 1,033,137 + ECD_00969 0.25 -0.0 1,033,304 + ECD_00969 0.65 +0.5 1,033,495 - +0.4 1,033,593 - ECD_00970 0.31 +0.7 1,033,593 - ECD_00970 0.31 +0.2 1,033,593 - ECD_00970 0.31 +0.6 1,033,593 - ECD_00970 0.31 +1.0 1,033,842 - +0.8 1,033,842 - -0.8 1,033,869 + +0.4 1,033,900 - -0.5 1,033,915 - -0.2 1,034,104 + ECD_00971 0.20 -0.6 1,034,105 - ECD_00971 0.20 +0.1 1,034,105 - ECD_00971 0.20 -1.1 1,034,203 + ECD_00971 0.28 +1.6 1,034,203 + ECD_00971 0.28 +0.1 1,034,204 - ECD_00971 0.28 -0.7 1,034,204 - ECD_00971 0.28 -0.3 1,034,370 + ECD_00971 0.42 +0.1 1,034,573 - ECD_00971 0.59 -0.8 1,034,713 + ECD_00971 0.71 -0.3 1,034,714 - ECD_00971 0.71 +0.2 1,034,714 - ECD_00971 0.71 -0.4 1,034,755 - ECD_00971 0.74 +0.5 1,035,169 + +0.7 1,035,935 - ECD_00974 0.13 -0.6 1,035,937 - ECD_00974 0.13 -0.0 1,035,937 - ECD_00974 0.13 +0.0
Or see this region's nucleotide sequence