Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00947 and ECD_00948 overlap by 8 nucleotides ECD_00948 and ECD_00949 are separated by 110 nucleotides ECD_00949 and ECD_00950 are separated by 173 nucleotides ECD_00950 and ECD_00951 overlap by 4 nucleotides
ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043
_00947
ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746
_00948
ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867
_00949
ECD_00950: ECD_00950 - FtsZ stabilizer, at 1,011,041 to 1,011,583
_00950
ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689
_00951
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-2
-1
0
1 at 1008.932 kb on - strand, within ECD_00947 at 1009.044 kb on + strand at 1009.209 kb on + strand, within ECD_00948 at 1009.293 kb on + strand, within ECD_00948 at 1009.505 kb on - strand, within ECD_00948 at 1009.541 kb on + strand, within ECD_00948 at 1009.592 kb on + strand, within ECD_00948 at 1010.250 kb on + strand, within ECD_00949 at 1010.487 kb on + strand, within ECD_00949 at 1010.570 kb on + strand, within ECD_00949 at 1011.126 kb on + strand, within ECD_00950 at 1011.618 kb on + strand at 1011.619 kb on - strand at 1011.781 kb on - strand, within ECD_00951 at 1011.781 kb on - strand, within ECD_00951
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,008,932 - ECD_00947 0.78 +0.0 1,009,044 + -0.7 1,009,209 + ECD_00948 0.24 -1.5 1,009,293 + ECD_00948 0.36 -0.6 1,009,505 - ECD_00948 0.66 -0.4 1,009,541 + ECD_00948 0.71 +0.1 1,009,592 + ECD_00948 0.78 -0.9 1,010,250 + ECD_00949 0.39 -0.5 1,010,487 + ECD_00949 0.62 -1.8 1,010,570 + ECD_00949 0.71 -0.4 1,011,126 + ECD_00950 0.16 +0.3 1,011,618 + +0.2 1,011,619 - +0.6 1,011,781 - ECD_00951 0.18 -0.0 1,011,781 - ECD_00951 0.18 +0.2
Or see this region's nucleotide sequence