Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00929 and ECD_00930 are separated by 180 nucleotides ECD_00930 and ECD_00931 are separated by 26 nucleotides ECD_00931 and ECD_00932 are separated by 221 nucleotides
ECD_00929: ECD_00929 - murein L,D-transpeptidase, at 986,137 to 987,984
_00929
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
ECD_00932: ECD_00932 - aspartate aminotransferase, PLP-dependent, at 989,609 to 990,799
_00932
Position (kb) 988
989 Strain fitness (log2 ratio) -2
-1
0
1 at 987.186 kb on - strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.298 kb on + strand, within ECD_00929 at 987.441 kb on + strand, within ECD_00929 at 987.625 kb on - strand, within ECD_00929 at 987.823 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.922 kb on + strand at 987.991 kb on + strand at 988.017 kb on + strand at 988.151 kb on + strand at 988.347 kb on + strand, within ECD_00930 at 988.460 kb on + strand, within ECD_00930 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand at 989.024 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.212 kb on + strand, within ECD_00931 at 989.270 kb on + strand, within ECD_00931 at 989.299 kb on + strand, within ECD_00931 at 989.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 987,186 - ECD_00929 0.57 +0.6 987,298 + ECD_00929 0.63 +1.3 987,298 + ECD_00929 0.63 -0.4 987,441 + ECD_00929 0.71 -0.4 987,625 - ECD_00929 0.81 -0.3 987,823 + -0.2 987,922 + -0.1 987,922 + -0.5 987,922 + +0.8 987,991 + -0.3 988,017 + +0.8 988,151 + -0.3 988,347 + ECD_00930 0.33 -2.2 988,460 + ECD_00930 0.54 -1.3 988,657 + ECD_00930 0.90 -1.7 988,683 + -0.9 988,751 + +0.6 988,789 + -0.1 989,024 + ECD_00931 0.44 +0.2 989,119 + ECD_00931 0.58 +0.1 989,119 + ECD_00931 0.58 -0.6 989,212 + ECD_00931 0.73 +0.5 989,270 + ECD_00931 0.82 +0.4 989,299 + ECD_00931 0.86 +0.5 989,351 + -0.3
Or see this region's nucleotide sequence