Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00923 and ECD_00924 overlap by 24 nucleotides ECD_00924 and ECD_00925 are separated by 135 nucleotides ECD_00925 and ECD_00926 overlap by 4 nucleotides
ECD_00923: ECD_00923 - protein kinase-like domain protein, at 976,842 to 977,735
_00923
ECD_00924: ECD_00924 - envelope biogenesis factor; DUF218 superfamily protein, at 977,712 to 978,491
_00924
ECD_00925: ECD_00925 - putative S-adenosyl-L-methionine-dependent methyltransferase, at 978,627 to 979,412
_00925
ECD_00926: ECD_00926 - chromosome condensin MukBEF, kleisin-like subunit, binds calcium, at 979,409 to 980,731
_00926
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1 at 977.634 kb on + strand, within ECD_00923 at 978.183 kb on - strand, within ECD_00924 at 978.516 kb on + strand at 978.516 kb on + strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.538 kb on + strand at 978.538 kb on + strand at 978.541 kb on + strand at 978.541 kb on + strand at 978.541 kb on + strand at 978.919 kb on + strand, within ECD_00925 at 979.018 kb on + strand, within ECD_00925 at 979.266 kb on + strand, within ECD_00925 at 979.347 kb on + strand at 979.347 kb on + strand at 979.349 kb on + strand at 979.352 kb on + strand at 979.367 kb on + strand at 979.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 977,634 + ECD_00923 0.89 +0.1 978,183 - ECD_00924 0.60 +0.7 978,516 + +0.0 978,516 + +0.5 978,518 + +0.2 978,518 + +0.1 978,518 + +0.1 978,519 - -0.4 978,538 + +0.1 978,538 + -1.2 978,541 + +0.5 978,541 + +0.6 978,541 + -0.5 978,919 + ECD_00925 0.37 -2.0 979,018 + ECD_00925 0.50 -0.4 979,266 + ECD_00925 0.81 -1.4 979,347 + -0.4 979,347 + -0.6 979,349 + -0.4 979,352 + +0.3 979,367 + +0.5 979,367 + +1.5
Or see this region's nucleotide sequence