Strain Fitness in Escherichia coli BL21 around ECD_00919

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00918 and ECD_00919 overlap by 4 nucleotidesECD_00919 and ECD_00920 are separated by 36 nucleotides ECD_00918: ECD_00918 - lipid ABC transporter permease/ATPase, at 971,711 to 973,459 _00918 ECD_00919: ECD_00919 - lipid A 4'kinase, at 973,456 to 974,442 _00919 ECD_00920: ECD_00920 - DUF1006 family protein with C-terminal wHTH domain, at 974,479 to 975,711 _00920 Position (kb) 973 974 975Strain fitness (log2 ratio) -1 0 1at 974.417 kb on + strandat 974.440 kb on + strandat 974.440 kb on + strandat 974.728 kb on + strand, within ECD_00920at 974.818 kb on + strand, within ECD_00920at 974.982 kb on + strand, within ECD_00920at 975.400 kb on - strand, within ECD_00920at 975.418 kb on + strand, within ECD_00920

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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974,417 + +1.6
974,440 + +0.1
974,440 + +0.6
974,728 + ECD_00920 0.20 -0.8
974,818 + ECD_00920 0.27 -0.1
974,982 + ECD_00920 0.41 +0.4
975,400 - ECD_00920 0.75 -0.8
975,418 + ECD_00920 0.76 +0.2

Or see this region's nucleotide sequence