Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00912 and ECD_00913 are separated by 168 nucleotides ECD_00913 and ECD_00914 are separated by 172 nucleotides ECD_00914 and ECD_00915 are separated by 110 nucleotides
ECD_00912: ECD_00912 - 5-enolpyruvylshikimate-3-phosphate synthetase, at 963,902 to 965,185
_00912
ECD_00913: ECD_00913 - putative peptidase-related chaperone, at 965,354 to 966,118
_00913
ECD_00914: ECD_00914 - cytidylate kinase, at 966,291 to 966,974
_00914
ECD_00915: ECD_00915 - 30S ribosomal subunit protein S1, at 967,085 to 968,758
_00915
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1 at 964.459 kb on + strand, within ECD_00912 at 964.460 kb on - strand, within ECD_00912 at 964.471 kb on + strand, within ECD_00912 at 964.610 kb on + strand, within ECD_00912 at 964.611 kb on - strand, within ECD_00912 at 964.781 kb on - strand, within ECD_00912 at 964.904 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.095 kb on + strand at 965.147 kb on + strand at 965.570 kb on + strand, within ECD_00913 at 965.614 kb on + strand, within ECD_00913 at 965.615 kb on - strand, within ECD_00913 at 965.637 kb on - strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.646 kb on - strand, within ECD_00913 at 965.647 kb on + strand, within ECD_00913 at 965.648 kb on - strand, within ECD_00913 at 965.807 kb on + strand, within ECD_00913 at 966.241 kb on + strand at 966.267 kb on + strand at 966.267 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 964,459 + ECD_00912 0.43 -2.4 964,460 - ECD_00912 0.43 -0.9 964,471 + ECD_00912 0.44 -1.9 964,610 + ECD_00912 0.55 -1.8 964,611 - ECD_00912 0.55 -0.9 964,781 - ECD_00912 0.68 -1.7 964,904 + ECD_00912 0.78 -1.8 965,045 + ECD_00912 0.89 -1.9 965,045 + ECD_00912 0.89 +0.0 965,095 + -1.7 965,147 + -0.8 965,570 + ECD_00913 0.28 -0.7 965,614 + ECD_00913 0.34 +0.1 965,615 - ECD_00913 0.34 +0.8 965,637 - ECD_00913 0.37 -0.3 965,645 + ECD_00913 0.38 +0.3 965,645 + ECD_00913 0.38 -0.7 965,645 + ECD_00913 0.38 +0.4 965,646 - ECD_00913 0.38 +0.1 965,647 + ECD_00913 0.38 -0.4 965,648 - ECD_00913 0.38 -0.1 965,807 + ECD_00913 0.59 +0.1 966,241 + -0.1 966,267 + +0.4 966,267 + +0.1
Or see this region's nucleotide sequence