Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00910 and ECD_00911 are separated by 198 nucleotides ECD_00911 and ECD_00912 are separated by 70 nucleotides
ECD_00910: ECD_00910 - UPF0702 family putative inner membrane protein, at 961,852 to 962,544
_00910
ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831
_00911
ECD_00912: ECD_00912 - 5-enolpyruvylshikimate-3-phosphate synthetase, at 963,902 to 965,185
_00912
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 961.759 kb on + strand at 961.768 kb on + strand at 961.783 kb on - strand at 961.922 kb on + strand, within ECD_00910 at 961.926 kb on + strand, within ECD_00910 at 961.943 kb on + strand, within ECD_00910 at 962.056 kb on + strand, within ECD_00910 at 962.082 kb on - strand, within ECD_00910 at 962.086 kb on - strand, within ECD_00910 at 962.097 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.262 kb on - strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.369 kb on + strand, within ECD_00910 at 962.391 kb on + strand, within ECD_00910 at 962.429 kb on - strand, within ECD_00910 at 962.437 kb on - strand, within ECD_00910 at 962.571 kb on + strand at 962.681 kb on + strand at 962.682 kb on - strand at 962.684 kb on + strand at 962.715 kb on + strand at 962.715 kb on + strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.783 kb on + strand at 962.841 kb on + strand at 962.842 kb on - strand at 962.941 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 963.028 kb on + strand, within ECD_00911 at 963.175 kb on + strand, within ECD_00911 at 963.177 kb on + strand, within ECD_00911 at 963.178 kb on - strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.315 kb on - strand, within ECD_00911 at 963.481 kb on + strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.571 kb on + strand, within ECD_00911 at 963.759 kb on + strand at 963.919 kb on - strand at 963.950 kb on - strand at 964.071 kb on + strand, within ECD_00912 at 964.091 kb on + strand, within ECD_00912 at 964.093 kb on + strand, within ECD_00912 at 964.261 kb on + strand, within ECD_00912 at 964.459 kb on + strand, within ECD_00912 at 964.460 kb on - strand, within ECD_00912 at 964.471 kb on + strand, within ECD_00912 at 964.610 kb on + strand, within ECD_00912 at 964.611 kb on - strand, within ECD_00912 at 964.781 kb on - strand, within ECD_00912
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 961,759 + -0.1 961,768 + -0.1 961,783 - +1.0 961,922 + ECD_00910 0.10 +0.1 961,926 + ECD_00910 0.11 +0.5 961,943 + ECD_00910 0.13 -0.1 962,056 + ECD_00910 0.29 +0.3 962,082 - ECD_00910 0.33 +0.7 962,086 - ECD_00910 0.34 -0.8 962,097 + ECD_00910 0.35 -0.7 962,261 + ECD_00910 0.59 -0.3 962,261 + ECD_00910 0.59 +2.3 962,262 - ECD_00910 0.59 -1.6 962,294 + ECD_00910 0.64 +0.7 962,294 + ECD_00910 0.64 +0.2 962,369 + ECD_00910 0.75 +0.6 962,391 + ECD_00910 0.78 +2.1 962,429 - ECD_00910 0.83 +1.1 962,437 - ECD_00910 0.84 -0.0 962,571 + -0.2 962,681 + -0.6 962,682 - -1.8 962,684 + +0.4 962,715 + -0.6 962,715 + +0.2 962,719 - -2.3 962,719 - -0.8 962,719 - -1.0 962,783 + -1.0 962,841 + -2.2 962,842 - -1.9 962,941 + ECD_00911 0.18 -1.8 962,948 + ECD_00911 0.19 -1.8 962,948 + ECD_00911 0.19 -1.4 963,028 + ECD_00911 0.26 -2.2 963,175 + ECD_00911 0.40 -1.2 963,177 + ECD_00911 0.40 -2.0 963,178 - ECD_00911 0.40 -1.7 963,314 + ECD_00911 0.52 -0.6 963,314 + ECD_00911 0.52 -0.9 963,315 - ECD_00911 0.53 -2.7 963,481 + ECD_00911 0.68 -1.8 963,482 - ECD_00911 0.68 -1.9 963,482 - ECD_00911 0.68 -3.0 963,569 + ECD_00911 0.76 -2.2 963,569 + ECD_00911 0.76 -1.6 963,569 + ECD_00911 0.76 -1.3 963,571 + ECD_00911 0.76 -1.7 963,759 + -2.1 963,919 - -0.7 963,950 - -3.4 964,071 + ECD_00912 0.13 -2.5 964,091 + ECD_00912 0.15 -0.9 964,093 + ECD_00912 0.15 -1.7 964,261 + ECD_00912 0.28 -0.6 964,459 + ECD_00912 0.43 -2.4 964,460 - ECD_00912 0.43 -0.9 964,471 + ECD_00912 0.44 -1.9 964,610 + ECD_00912 0.55 -1.8 964,611 - ECD_00912 0.55 -0.9 964,781 - ECD_00912 0.68 -1.7
Or see this region's nucleotide sequence