Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00892 and ECD_00893 are separated by 544 nucleotides ECD_00893 and ECD_00894 are separated by 134 nucleotides
ECD_00892: ECD_00892 - thioredoxin reductase, FAD/NAD(P)-binding, at 936,141 to 937,106
_00892
ECD_00893: ECD_00893 - leucine-responsive global transcriptional regulator, at 937,651 to 938,145
_00893
ECD_00894: ECD_00894 - DNA translocase at septal ring sorting daughter chromsomes, at 938,280 to 942,308
_00894
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 937.174 kb on + strand at 937.400 kb on + strand at 937.406 kb on + strand at 937.406 kb on + strand at 937.408 kb on + strand at 937.408 kb on + strand at 937.428 kb on + strand at 937.432 kb on + strand at 937.432 kb on + strand at 937.459 kb on + strand at 937.463 kb on + strand at 937.464 kb on - strand at 937.570 kb on + strand at 937.623 kb on - strand at 937.646 kb on + strand at 937.655 kb on + strand at 937.701 kb on + strand, within ECD_00893 at 937.710 kb on + strand, within ECD_00893 at 937.833 kb on + strand, within ECD_00893 at 937.855 kb on + strand, within ECD_00893 at 937.890 kb on + strand, within ECD_00893 at 937.890 kb on + strand, within ECD_00893 at 937.993 kb on + strand, within ECD_00893 at 938.029 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.089 kb on + strand, within ECD_00893 at 938.170 kb on + strand at 938.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 937,174 + -0.4 937,400 + -1.3 937,406 + +0.4 937,406 + -0.7 937,408 + -0.2 937,408 + -0.1 937,428 + -0.1 937,432 + -0.6 937,432 + +0.1 937,459 + -0.3 937,463 + +0.1 937,464 - -0.6 937,570 + -0.9 937,623 - -1.4 937,646 + -0.9 937,655 + +0.2 937,701 + ECD_00893 0.10 -0.9 937,710 + ECD_00893 0.12 -2.4 937,833 + ECD_00893 0.37 -2.7 937,855 + ECD_00893 0.41 -0.9 937,890 + ECD_00893 0.48 -1.6 937,890 + ECD_00893 0.48 -0.8 937,993 + ECD_00893 0.69 -0.7 938,029 + ECD_00893 0.76 -0.9 938,089 + ECD_00893 0.88 -1.6 938,089 + ECD_00893 0.88 -1.2 938,089 + ECD_00893 0.88 -1.2 938,089 + ECD_00893 0.88 -2.0 938,089 + ECD_00893 0.88 -0.6 938,170 + +0.0 938,170 + -3.0
Or see this region's nucleotide sequence