Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00862 and ECD_00863 are separated by 59 nucleotides ECD_00863 and ECD_00864 are separated by 40 nucleotides ECD_00864 and ECD_00865 are separated by 198 nucleotides
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
ECD_00863: ECD_00863 - DUF2593 family inner membrane protein, at 902,693 to 903,181
_00863
ECD_00864: ECD_00864 - 23S rRNA m(5)U747 methyltransferase, SAM-dependent, at 903,222 to 904,349
_00864
ECD_00865: ECD_00865 - arginine ABC transporter periplasmic binding protein, at 904,548 to 905,279
_00865
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1 at 902.247 kb on + strand, within ECD_00862 at 902.402 kb on + strand, within ECD_00862 at 902.663 kb on + strand at 902.789 kb on - strand, within ECD_00863 at 902.791 kb on + strand, within ECD_00863 at 902.981 kb on + strand, within ECD_00863 at 903.011 kb on + strand, within ECD_00863 at 903.221 kb on + strand at 903.392 kb on + strand, within ECD_00864 at 903.558 kb on + strand, within ECD_00864 at 903.559 kb on - strand, within ECD_00864 at 903.572 kb on + strand, within ECD_00864 at 903.886 kb on - strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 903.929 kb on + strand, within ECD_00864 at 904.213 kb on - strand, within ECD_00864 at 904.318 kb on - strand at 904.586 kb on + strand at 904.707 kb on - strand, within ECD_00865 at 904.779 kb on - strand, within ECD_00865 at 904.928 kb on - strand, within ECD_00865 at 905.172 kb on - strand, within ECD_00865
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 902,247 + ECD_00862 0.54 +0.7 902,402 + ECD_00862 0.73 +0.2 902,663 + +0.4 902,789 - ECD_00863 0.20 +1.4 902,791 + ECD_00863 0.20 +0.4 902,981 + ECD_00863 0.59 +0.2 903,011 + ECD_00863 0.65 -0.3 903,221 + -0.0 903,392 + ECD_00864 0.15 -0.1 903,558 + ECD_00864 0.30 +0.3 903,559 - ECD_00864 0.30 +0.2 903,572 + ECD_00864 0.31 -0.4 903,886 - ECD_00864 0.59 -0.3 903,929 + ECD_00864 0.63 -0.8 903,929 + ECD_00864 0.63 -0.9 904,213 - ECD_00864 0.88 +0.2 904,318 - +0.1 904,586 + +0.1 904,707 - ECD_00865 0.22 +1.4 904,779 - ECD_00865 0.32 +0.2 904,928 - ECD_00865 0.52 -2.0 905,172 - ECD_00865 0.85 -1.3
Or see this region's nucleotide sequence