Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00812 and ECD_00813 are separated by 83 nucleotides ECD_00813 and ECD_00814 are separated by 179 nucleotides ECD_00814 and ECD_00815 are separated by 108 nucleotides
ECD_00812: ECD_00812 - putative drug efflux MFS transporter, inner membrane protein, at 870,050 to 871,258
_00812
ECD_00813: ECD_00813 - transcriptional regulator of csgD and ybiJI; autoregulator, at 871,342 to 871,878
_00813
ECD_00814: ECD_00814 - hypothetical protein, at 872,058 to 872,390
_00814
ECD_00815: ECD_00815 - integrase for prophage, at 872,499 to 873,443
_00815
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1 at 870.537 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.713 kb on - strand, within ECD_00812 at 870.721 kb on + strand, within ECD_00812 at 870.741 kb on - strand, within ECD_00812 at 870.977 kb on + strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.028 kb on - strand, within ECD_00812 at 871.028 kb on - strand, within ECD_00812 at 871.205 kb on - strand at 871.237 kb on + strand at 871.238 kb on - strand at 871.258 kb on + strand at 871.552 kb on + strand, within ECD_00813 at 871.661 kb on - strand, within ECD_00813 at 871.915 kb on - strand at 872.083 kb on - strand at 872.101 kb on - strand, within ECD_00814 at 872.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 870,537 - ECD_00812 0.40 +0.1 870,709 - ECD_00812 0.55 +0.9 870,709 - ECD_00812 0.55 +0.8 870,709 - ECD_00812 0.55 -0.6 870,709 - ECD_00812 0.55 -0.6 870,713 - ECD_00812 0.55 +0.6 870,721 + ECD_00812 0.56 -0.8 870,741 - ECD_00812 0.57 +0.5 870,977 + ECD_00812 0.77 +1.2 870,978 - ECD_00812 0.77 +0.5 870,978 - ECD_00812 0.77 -0.2 870,978 - ECD_00812 0.77 -0.3 870,978 - ECD_00812 0.77 +0.9 871,027 + ECD_00812 0.81 +0.3 871,027 + ECD_00812 0.81 -0.0 871,027 + ECD_00812 0.81 +1.5 871,028 - ECD_00812 0.81 +0.1 871,028 - ECD_00812 0.81 -1.1 871,205 - -0.4 871,237 + -0.3 871,238 - -0.5 871,258 + +0.5 871,552 + ECD_00813 0.39 -1.0 871,661 - ECD_00813 0.59 -1.1 871,915 - -0.8 872,083 - -0.4 872,101 - ECD_00814 0.13 -1.4 872,424 + +0.2
Or see this region's nucleotide sequence