Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00806 and ECD_00807 are separated by 46 nucleotides ECD_00807 and ECD_00808 are separated by 57 nucleotides ECD_00808 and ECD_00809 are separated by 284 nucleotides
ECD_00806: ECD_00806 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a, at 864,646 to 865,848
_00806
ECD_00807: ECD_00807 - deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx, at 865,895 to 866,653
_00807
ECD_00808: ECD_00808 - undecaprenyl pyrophosphate phosphatase, at 866,711 to 867,307
_00808
ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824
_00809
Position (kb)
865
866
867 Strain fitness (log2 ratio)
-1
0
1 at 864.900 kb on + strand, within ECD_00806 at 865.056 kb on + strand, within ECD_00806 at 865.072 kb on + strand, within ECD_00806 at 865.407 kb on + strand, within ECD_00806 at 865.646 kb on - strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.889 kb on - strand at 865.889 kb on - strand at 865.896 kb on + strand at 865.900 kb on - strand at 865.900 kb on - strand at 865.938 kb on + strand at 865.939 kb on - strand at 865.939 kb on - strand at 865.939 kb on - strand at 865.939 kb on - strand at 866.451 kb on - strand, within ECD_00807 at 866.594 kb on - strand at 866.671 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.789 kb on - strand, within ECD_00808 at 866.822 kb on - strand, within ECD_00808 at 866.837 kb on - strand, within ECD_00808 at 866.958 kb on - strand, within ECD_00808 at 867.364 kb on - strand at 867.376 kb on - strand at 867.401 kb on - strand at 867.473 kb on + strand at 867.474 kb on - strand at 867.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 864,900 + ECD_00806 0.21 +0.1 865,056 + ECD_00806 0.34 +0.1 865,072 + ECD_00806 0.35 -0.7 865,407 + ECD_00806 0.63 +0.3 865,646 - ECD_00806 0.83 +1.2 865,647 + ECD_00806 0.83 +0.3 865,647 + ECD_00806 0.83 -0.0 865,647 + ECD_00806 0.83 +0.3 865,647 + ECD_00806 0.83 +0.3 865,647 + ECD_00806 0.83 -1.2 865,647 + ECD_00806 0.83 -0.1 865,889 - -0.4 865,889 - -0.1 865,896 + -1.2 865,900 - -0.3 865,900 - +0.2 865,938 + -0.2 865,939 - -0.3 865,939 - +0.9 865,939 - +0.6 865,939 - -0.6 866,451 - ECD_00807 0.73 +0.3 866,594 - +0.2 866,671 - +0.2 866,691 - +0.6 866,691 - -0.3 866,691 - +0.2 866,789 - ECD_00808 0.13 -0.4 866,822 - ECD_00808 0.19 +0.3 866,837 - ECD_00808 0.21 +0.7 866,958 - ECD_00808 0.41 +0.3 867,364 - +0.6 867,376 - -0.9 867,401 - +0.4 867,473 + +0.5 867,474 - -0.2 867,493 + +0.8
Or see this region's nucleotide sequence