Strain Fitness in Escherichia coli BL21 around ECD_00786

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00785 and ECD_00786 are separated by 58 nucleotidesECD_00786 and ECD_00787 are separated by 218 nucleotides ECD_00785: ECD_00785 - putative transporter, at 837,639 to 838,757 _00785 ECD_00786: ECD_00786 - L,D-transpeptidase linking Lpp to murein, at 838,816 to 839,736 _00786 ECD_00787: ECD_00787 - ABC-F family putative regulatory ATPase, at 839,955 to 841,547 _00787 Position (kb) 838 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1at 837.891 kb on - strand, within ECD_00785at 837.947 kb on + strand, within ECD_00785at 837.966 kb on - strand, within ECD_00785at 838.073 kb on + strand, within ECD_00785at 838.266 kb on + strand, within ECD_00785at 838.266 kb on + strand, within ECD_00785at 838.267 kb on - strand, within ECD_00785at 838.268 kb on + strand, within ECD_00785at 838.471 kb on + strand, within ECD_00785at 838.594 kb on + strand, within ECD_00785at 838.594 kb on + strand, within ECD_00785at 838.740 kb on - strandat 838.804 kb on - strandat 838.992 kb on - strand, within ECD_00786at 838.992 kb on - strand, within ECD_00786at 839.120 kb on - strand, within ECD_00786at 839.165 kb on + strand, within ECD_00786at 839.181 kb on - strand, within ECD_00786at 839.189 kb on + strand, within ECD_00786at 839.190 kb on - strand, within ECD_00786at 839.190 kb on - strand, within ECD_00786at 839.332 kb on - strand, within ECD_00786at 839.337 kb on + strand, within ECD_00786at 839.337 kb on + strand, within ECD_00786at 839.403 kb on - strand, within ECD_00786at 839.403 kb on - strand, within ECD_00786at 839.406 kb on - strand, within ECD_00786at 839.491 kb on - strand, within ECD_00786at 839.574 kb on - strand, within ECD_00786at 839.593 kb on - strand, within ECD_00786at 839.658 kb on - strandat 839.663 kb on - strandat 839.779 kb on + strandat 839.802 kb on - strandat 839.803 kb on + strandat 839.804 kb on - strandat 839.909 kb on + strandat 840.072 kb on - strandat 840.083 kb on + strandat 840.155 kb on + strand, within ECD_00787at 840.296 kb on + strand, within ECD_00787at 840.296 kb on + strand, within ECD_00787at 840.317 kb on + strand, within ECD_00787at 840.317 kb on + strand, within ECD_00787at 840.611 kb on + strand, within ECD_00787at 840.663 kb on + strand, within ECD_00787at 840.664 kb on - strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.672 kb on + strand, within ECD_00787at 840.673 kb on - strand, within ECD_00787

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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837,891 - ECD_00785 0.23 -0.1
837,947 + ECD_00785 0.28 +0.8
837,966 - ECD_00785 0.29 +0.3
838,073 + ECD_00785 0.39 -0.0
838,266 + ECD_00785 0.56 +0.4
838,266 + ECD_00785 0.56 +0.0
838,267 - ECD_00785 0.56 +0.5
838,268 + ECD_00785 0.56 -0.6
838,471 + ECD_00785 0.74 -0.3
838,594 + ECD_00785 0.85 -0.6
838,594 + ECD_00785 0.85 +0.5
838,740 - +0.5
838,804 - +0.5
838,992 - ECD_00786 0.19 -2.3
838,992 - ECD_00786 0.19 -1.9
839,120 - ECD_00786 0.33 -0.0
839,165 + ECD_00786 0.38 -2.8
839,181 - ECD_00786 0.40 -0.9
839,189 + ECD_00786 0.40 -1.5
839,190 - ECD_00786 0.41 -2.5
839,190 - ECD_00786 0.41 -1.2
839,332 - ECD_00786 0.56 -3.3
839,337 + ECD_00786 0.57 -2.6
839,337 + ECD_00786 0.57 -2.1
839,403 - ECD_00786 0.64 -3.5
839,403 - ECD_00786 0.64 -0.8
839,406 - ECD_00786 0.64 -2.5
839,491 - ECD_00786 0.73 -1.9
839,574 - ECD_00786 0.82 -2.7
839,593 - ECD_00786 0.84 -2.6
839,658 - -1.7
839,663 - -1.8
839,779 + -1.7
839,802 - -0.2
839,803 + -0.1
839,804 - +0.4
839,909 + +0.8
840,072 - -1.1
840,083 + -0.0
840,155 + ECD_00787 0.13 +0.7
840,296 + ECD_00787 0.21 +0.4
840,296 + ECD_00787 0.21 -0.7
840,317 + ECD_00787 0.23 -0.5
840,317 + ECD_00787 0.23 +0.5
840,611 + ECD_00787 0.41 +0.8
840,663 + ECD_00787 0.44 +0.8
840,664 - ECD_00787 0.45 -0.1
840,672 + ECD_00787 0.45 +0.4
840,672 + ECD_00787 0.45 -0.3
840,672 + ECD_00787 0.45 +0.3
840,673 - ECD_00787 0.45 +0.0

Or see this region's nucleotide sequence