Strain Fitness in Escherichia coli BL21 around ECD_00682

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00681 and ECD_00682 overlap by 7 nucleotidesECD_00682 and ECD_00683 overlap by 1 nucleotides ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136 _00681 ECD_00682: ECD_00682 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 714,130 to 714,477 _00682 ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243 _00683 Position (kb) 714 715Strain fitness (log2 ratio) -2 -1 0 1at 713.243 kb on - strandat 713.308 kb on - strandat 713.476 kb on + strandat 713.722 kb on + strandat 714.094 kb on + strand, within ECD_00681at 714.094 kb on + strand, within ECD_00681at 714.223 kb on + strand, within ECD_00682at 714.223 kb on + strand, within ECD_00682at 714.262 kb on + strand, within ECD_00682at 714.263 kb on - strand, within ECD_00682at 714.330 kb on + strand, within ECD_00682at 714.684 kb on + strand, within ECD_00683at 714.685 kb on - strand, within ECD_00683at 714.708 kb on + strand, within ECD_00683at 714.736 kb on - strand, within ECD_00683at 714.743 kb on + strand, within ECD_00683at 714.815 kb on + strand, within ECD_00683at 714.819 kb on + strand, within ECD_00683at 715.097 kb on + strand, within ECD_00683

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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713,243 - +0.2
713,308 - +0.0
713,476 + -0.4
713,722 + +0.1
714,094 + ECD_00681 0.89 -0.5
714,094 + ECD_00681 0.89 -1.4
714,223 + ECD_00682 0.27 -1.4
714,223 + ECD_00682 0.27 +0.5
714,262 + ECD_00682 0.38 -0.9
714,263 - ECD_00682 0.38 -0.1
714,330 + ECD_00682 0.57 -0.9
714,684 + ECD_00683 0.12 -0.4
714,685 - ECD_00683 0.12 -2.1
714,708 + ECD_00683 0.13 -1.0
714,736 - ECD_00683 0.15 +0.4
714,743 + ECD_00683 0.15 -1.0
714,815 + ECD_00683 0.19 -1.3
714,819 + ECD_00683 0.19 -2.1
715,097 + ECD_00683 0.35 -0.8

Or see this region's nucleotide sequence