Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00666 and ECD_00667 are separated by 147 nucleotides ECD_00667 and ECD_00668 overlap by 4 nucleotides
ECD_00666: ECD_00666 - H repeat-associated putative transposase, at 696,764 to 697,525
_00666
ECD_00667: ECD_00667 - DUF1722 family protein, at 697,673 to 698,182
_00667
ECD_00668: ECD_00668 - deoxyribodipyrimidine photolyase, FAD-binding, at 698,179 to 699,600
_00668
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1 at 697.645 kb on + strand at 697.732 kb on - strand, within ECD_00667 at 698.129 kb on + strand, within ECD_00667 at 698.280 kb on - strand at 698.281 kb on + strand at 698.282 kb on - strand at 698.284 kb on - strand at 698.284 kb on - strand at 698.364 kb on - strand, within ECD_00668 at 698.389 kb on - strand, within ECD_00668 at 698.442 kb on + strand, within ECD_00668 at 698.482 kb on + strand, within ECD_00668 at 698.483 kb on - strand, within ECD_00668 at 698.484 kb on + strand, within ECD_00668 at 698.489 kb on - strand, within ECD_00668 at 698.544 kb on + strand, within ECD_00668 at 698.640 kb on + strand, within ECD_00668 at 698.640 kb on + strand, within ECD_00668 at 698.739 kb on + strand, within ECD_00668 at 698.846 kb on - strand, within ECD_00668 at 698.997 kb on + strand, within ECD_00668 at 698.998 kb on - strand, within ECD_00668 at 699.040 kb on + strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668 at 699.041 kb on - strand, within ECD_00668
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 697,645 + +0.0 697,732 - ECD_00667 0.12 -0.4 698,129 + ECD_00667 0.89 -1.1 698,280 - -0.0 698,281 + -1.2 698,282 - -0.2 698,284 - +1.0 698,284 - -0.3 698,364 - ECD_00668 0.13 -0.3 698,389 - ECD_00668 0.15 -0.3 698,442 + ECD_00668 0.18 +0.2 698,482 + ECD_00668 0.21 -0.0 698,483 - ECD_00668 0.21 -0.2 698,484 + ECD_00668 0.21 -0.8 698,489 - ECD_00668 0.22 +0.6 698,544 + ECD_00668 0.26 +0.6 698,640 + ECD_00668 0.32 -1.0 698,640 + ECD_00668 0.32 -0.2 698,739 + ECD_00668 0.39 +0.0 698,846 - ECD_00668 0.47 -0.3 698,997 + ECD_00668 0.58 -0.4 698,998 - ECD_00668 0.58 -0.5 699,040 + ECD_00668 0.61 +0.7 699,041 - ECD_00668 0.61 -0.8 699,041 - ECD_00668 0.61 +1.1 699,041 - ECD_00668 0.61 -0.9
Or see this region's nucleotide sequence