Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00009 and ECD_t00010 are separated by 47 nucleotides ECD_t00010 and ECD_t00011 are separated by 15 nucleotides ECD_t00011 and ECD_t00012 are separated by 34 nucleotides ECD_t00012 and ECD_t00013 are separated by 23 nucleotides ECD_t00013 and ECD_t00014 are separated by 8 nucleotides ECD_t00014 and ECD_00631 are separated by 380 nucleotides ECD_00631 and ECD_00632 are separated by 396 nucleotides
ECD_t00009: ECD_t00009 - tRNA-Gln, at 656,416 to 656,490
_t00009
ECD_t00010: ECD_t00010 - tRNA-Met, at 656,538 to 656,614
_t00010
ECD_t00011: ECD_t00011 - tRNA-Gln, at 656,630 to 656,704
_t00011
ECD_t00012: ECD_t00012 - tRNA-Gln, at 656,739 to 656,813
_t00012
ECD_t00013: ECD_t00013 - tRNA-Leu, at 656,837 to 656,921
_t00013
ECD_t00014: ECD_t00014 - tRNA-Met, at 656,930 to 657,006
_t00014
ECD_00631: ECD_00631 - asparagine synthetase B, at 657,387 to 659,051
_00631
ECD_00632: ECD_00632 - UMP phosphatase, at 659,448 to 660,200
_00632
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.578 kb on - strand, within ECD_t00010 at 656.640 kb on - strand, within ECD_t00011 at 657.142 kb on - strand at 657.153 kb on - strand at 657.160 kb on - strand at 657.160 kb on - strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.183 kb on - strand at 657.201 kb on + strand at 657.228 kb on + strand at 657.228 kb on + strand at 657.247 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.344 kb on - strand at 657.392 kb on + strand at 657.392 kb on + strand at 657.393 kb on - strand at 657.393 kb on - strand at 657.394 kb on + strand at 657.395 kb on - strand at 657.473 kb on + strand at 657.566 kb on - strand, within ECD_00631 at 657.566 kb on - strand, within ECD_00631 at 657.592 kb on + strand, within ECD_00631 at 657.677 kb on - strand, within ECD_00631 at 657.677 kb on - strand, within ECD_00631 at 657.791 kb on + strand, within ECD_00631 at 657.901 kb on + strand, within ECD_00631 at 657.902 kb on - strand, within ECD_00631 at 657.905 kb on + strand, within ECD_00631 at 657.905 kb on + strand, within ECD_00631 at 657.905 kb on + strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 657.906 kb on - strand, within ECD_00631 at 658.060 kb on + strand, within ECD_00631 at 658.096 kb on + strand, within ECD_00631 at 658.096 kb on + strand, within ECD_00631 at 658.096 kb on + strand, within ECD_00631 at 658.111 kb on + strand, within ECD_00631 at 658.147 kb on - strand, within ECD_00631 at 658.248 kb on + strand, within ECD_00631 at 658.249 kb on - strand, within ECD_00631 at 658.249 kb on - strand, within ECD_00631 at 658.303 kb on + strand, within ECD_00631 at 658.480 kb on + strand, within ECD_00631 at 658.481 kb on - strand, within ECD_00631 at 658.514 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.861 kb on + strand, within ECD_00631 at 658.862 kb on - strand, within ECD_00631 at 658.998 kb on - strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.052 kb on - strand at 659.354 kb on - strand at 659.446 kb on - strand at 659.446 kb on - strand at 659.454 kb on - strand at 659.480 kb on - strand at 659.683 kb on + strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.806 kb on + strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.817 kb on - strand, within ECD_00632 at 659.836 kb on + strand, within ECD_00632 at 659.837 kb on - strand, within ECD_00632 at 659.885 kb on + strand, within ECD_00632 at 659.938 kb on + strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.996 kb on - strand, within ECD_00632 at 660.013 kb on - strand, within ECD_00632
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 656,392 - -0.9 656,392 - -0.5 656,392 - +0.2 656,392 - +0.1 656,392 - -0.3 656,392 - -0.2 656,399 - +0.2 656,399 - -0.3 656,578 - ECD_t00010 0.52 -0.8 656,640 - ECD_t00011 0.13 -0.5 657,142 - +0.1 657,153 - -0.5 657,160 - -0.5 657,160 - +0.7 657,182 + +0.6 657,182 + -1.3 657,182 + -0.7 657,183 - -0.1 657,201 + +0.5 657,228 + -0.0 657,228 + -0.6 657,247 + +0.2 657,262 + +1.0 657,262 + -0.4 657,262 + +0.3 657,344 - +0.5 657,392 + +1.1 657,392 + +0.2 657,393 - +0.4 657,393 - +0.2 657,394 + +0.1 657,395 - +0.1 657,473 + +0.5 657,566 - ECD_00631 0.11 +0.6 657,566 - ECD_00631 0.11 -0.4 657,592 + ECD_00631 0.12 -1.4 657,677 - ECD_00631 0.17 +0.3 657,677 - ECD_00631 0.17 -0.2 657,791 + ECD_00631 0.24 -0.6 657,901 + ECD_00631 0.31 -2.0 657,902 - ECD_00631 0.31 +0.1 657,905 + ECD_00631 0.31 -0.1 657,905 + ECD_00631 0.31 +0.8 657,905 + ECD_00631 0.31 -0.5 657,906 - ECD_00631 0.31 +0.3 657,906 - ECD_00631 0.31 +0.2 657,906 - ECD_00631 0.31 -0.2 657,906 - ECD_00631 0.31 -0.7 657,906 - ECD_00631 0.31 +0.2 657,906 - ECD_00631 0.31 +0.6 658,060 + ECD_00631 0.40 -0.6 658,096 + ECD_00631 0.43 -0.6 658,096 + ECD_00631 0.43 -0.4 658,096 + ECD_00631 0.43 -0.5 658,111 + ECD_00631 0.43 -1.0 658,147 - ECD_00631 0.46 +0.2 658,248 + ECD_00631 0.52 -0.2 658,249 - ECD_00631 0.52 -0.1 658,249 - ECD_00631 0.52 +0.4 658,303 + ECD_00631 0.55 +0.4 658,480 + ECD_00631 0.66 -1.1 658,481 - ECD_00631 0.66 +0.4 658,514 - ECD_00631 0.68 -1.2 658,583 - ECD_00631 0.72 -0.0 658,583 - ECD_00631 0.72 +0.7 658,583 - ECD_00631 0.72 -0.0 658,612 + ECD_00631 0.74 -0.1 658,612 + ECD_00631 0.74 +0.1 658,612 + ECD_00631 0.74 -0.9 658,612 + ECD_00631 0.74 +0.2 658,612 + ECD_00631 0.74 -1.0 658,613 - ECD_00631 0.74 +0.2 658,613 - ECD_00631 0.74 +1.7 658,613 - ECD_00631 0.74 +0.7 658,861 + ECD_00631 0.89 -0.2 658,862 - ECD_00631 0.89 -0.1 658,998 - -0.2 659,051 + -0.1 659,051 + +0.2 659,051 + +0.7 659,051 + -0.3 659,052 - -0.4 659,354 - +0.7 659,446 - +0.0 659,446 - -0.2 659,454 - -0.2 659,480 - -0.0 659,683 + ECD_00632 0.31 +0.3 659,684 - ECD_00632 0.31 +0.0 659,684 - ECD_00632 0.31 -0.1 659,684 - ECD_00632 0.31 -0.5 659,806 + ECD_00632 0.48 +0.1 659,807 - ECD_00632 0.48 +0.1 659,807 - ECD_00632 0.48 -0.4 659,817 - ECD_00632 0.49 +0.9 659,836 + ECD_00632 0.52 +1.2 659,837 - ECD_00632 0.52 +0.8 659,885 + ECD_00632 0.58 -0.1 659,938 + ECD_00632 0.65 -0.3 659,994 - ECD_00632 0.73 -0.1 659,994 - ECD_00632 0.73 -0.6 659,996 - ECD_00632 0.73 +1.0 660,013 - ECD_00632 0.75 +0.2
Or see this region's nucleotide sequence