Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00591 and ECD_00592 are separated by 587 nucleotides ECD_00592 and ECD_00593 are separated by 168 nucleotides ECD_00593 and ECD_00594 are separated by 54 nucleotides ECD_00594 and ECD_00595 are separated by 92 nucleotides
ECD_00591: ECD_00591 - anaerobic C4-dicarboxylate transport, at 614,950 to 616,335
_00591
ECD_00592: ECD_00592 - phospholipid:lipid A palmitoyltransferase, at 616,923 to 617,483
_00592
ECD_00593: ECD_00593 - constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein, at 617,652 to 617,861
_00593
ECD_00594: ECD_00594 - fluoride efflux channel, dual topology membrane protein, at 617,916 to 618,299
_00594
ECD_00595: ECD_00595 - putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family), at 618,392 to 619,180
_00595
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1 at 615.997 kb on - strand, within ECD_00591 at 615.999 kb on + strand, within ECD_00591 at 616.000 kb on - strand, within ECD_00591 at 616.036 kb on - strand, within ECD_00591 at 616.062 kb on - strand, within ECD_00591 at 616.243 kb on + strand at 616.244 kb on - strand at 616.286 kb on - strand at 616.881 kb on + strand at 617.206 kb on - strand, within ECD_00592 at 617.206 kb on - strand, within ECD_00592 at 617.421 kb on + strand, within ECD_00592 at 617.422 kb on - strand, within ECD_00592 at 617.437 kb on - strand at 617.437 kb on - strand at 617.627 kb on + strand at 617.638 kb on + strand at 617.639 kb on - strand at 617.639 kb on - strand at 617.675 kb on + strand, within ECD_00593 at 617.675 kb on + strand, within ECD_00593 at 617.675 kb on + strand, within ECD_00593 at 617.774 kb on + strand, within ECD_00593 at 617.849 kb on - strand at 617.860 kb on - strand at 617.918 kb on - strand at 618.028 kb on - strand, within ECD_00594 at 618.157 kb on - strand, within ECD_00594 at 618.157 kb on - strand, within ECD_00594 at 618.295 kb on - strand at 618.339 kb on + strand at 618.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 615,997 - ECD_00591 0.76 -0.5 615,999 + ECD_00591 0.76 +1.3 616,000 - ECD_00591 0.76 +0.7 616,036 - ECD_00591 0.78 -0.1 616,062 - ECD_00591 0.80 +0.0 616,243 + +0.2 616,244 - +0.7 616,286 - +0.4 616,881 + +1.5 617,206 - ECD_00592 0.50 -0.4 617,206 - ECD_00592 0.50 +1.0 617,421 + ECD_00592 0.89 -1.0 617,422 - ECD_00592 0.89 -0.5 617,437 - -0.2 617,437 - +0.4 617,627 + -0.3 617,638 + +0.8 617,639 - +1.3 617,639 - -0.4 617,675 + ECD_00593 0.11 -0.3 617,675 + ECD_00593 0.11 -1.0 617,675 + ECD_00593 0.11 +0.2 617,774 + ECD_00593 0.58 -0.2 617,849 - -1.9 617,860 - +0.4 617,918 - -1.0 618,028 - ECD_00594 0.29 +0.5 618,157 - ECD_00594 0.63 -0.6 618,157 - ECD_00594 0.63 +0.1 618,295 - +0.4 618,339 + -0.4 618,350 - +1.1
Or see this region's nucleotide sequence