Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00575 and ECD_00576 are separated by 120 nucleotides ECD_00576 and ECD_00577 are separated by 220 nucleotides ECD_00577 and ECD_00578 are separated by 230 nucleotides ECD_00578 and ECD_00579 are separated by 229 nucleotides
ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148
_00575
ECD_00576: ECD_00576 - universal stress protein UP12, at 601,269 to 601,697
_00576
ECD_00577: ECD_00577 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 601,918 to 603,156
_00577
ECD_00578: ECD_00578 - regulator of nucleoside diphosphate kinase, at 603,387 to 603,797
_00578
ECD_00579: ECD_00579 - ribonuclease I, at 604,027 to 604,833
_00579
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -1
0
1 at 601.217 kb on - strand at 601.258 kb on + strand at 601.371 kb on + strand, within ECD_00576 at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.694 kb on - strand at 601.933 kb on + strand at 601.934 kb on - strand at 602.219 kb on - strand, within ECD_00577 at 602.304 kb on + strand, within ECD_00577 at 602.427 kb on + strand, within ECD_00577 at 602.494 kb on + strand, within ECD_00577 at 602.495 kb on - strand, within ECD_00577 at 602.661 kb on + strand, within ECD_00577 at 602.702 kb on + strand, within ECD_00577 at 602.702 kb on + strand, within ECD_00577 at 602.998 kb on + strand, within ECD_00577 at 602.998 kb on + strand, within ECD_00577 at 603.000 kb on + strand, within ECD_00577 at 603.125 kb on + strand at 603.125 kb on + strand at 603.152 kb on + strand at 603.153 kb on - strand at 603.223 kb on + strand at 603.389 kb on - strand at 603.548 kb on + strand, within ECD_00578 at 603.568 kb on + strand, within ECD_00578 at 603.782 kb on + strand at 603.782 kb on + strand at 603.783 kb on - strand at 603.835 kb on + strand at 603.836 kb on - strand at 603.842 kb on - strand at 603.881 kb on - strand at 603.896 kb on - strand at 603.963 kb on - strand at 603.963 kb on - strand at 603.967 kb on - strand at 603.990 kb on - strand at 604.068 kb on + strand at 604.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 601,217 - -0.0 601,258 + +0.1 601,371 + ECD_00576 0.24 +0.2 601,694 - -0.9 601,694 - +0.1 601,694 - -0.1 601,694 - -0.4 601,933 + -1.4 601,934 - -0.4 602,219 - ECD_00577 0.24 -1.0 602,304 + ECD_00577 0.31 -0.1 602,427 + ECD_00577 0.41 +0.2 602,494 + ECD_00577 0.46 -0.2 602,495 - ECD_00577 0.47 -0.8 602,661 + ECD_00577 0.60 -0.7 602,702 + ECD_00577 0.63 -0.2 602,702 + ECD_00577 0.63 -0.4 602,998 + ECD_00577 0.87 -0.0 602,998 + ECD_00577 0.87 +0.1 603,000 + ECD_00577 0.87 -0.1 603,125 + -0.2 603,125 + +0.0 603,152 + -0.1 603,153 - +0.4 603,223 + -0.6 603,389 - +0.2 603,548 + ECD_00578 0.39 -0.4 603,568 + ECD_00578 0.44 -0.4 603,782 + +0.8 603,782 + +0.4 603,783 - -0.3 603,835 + +0.4 603,836 - +0.3 603,842 - +0.3 603,881 - -0.1 603,896 - +0.3 603,963 - +0.2 603,963 - +0.4 603,967 - +0.1 603,990 - +0.2 604,068 + -0.1 604,069 - +0.3
Or see this region's nucleotide sequence