Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00573 and ECD_00574 are separated by 371 nucleotides ECD_00574 and ECD_00575 are separated by 244 nucleotides
ECD_00573: ECD_00573 - thiol:disulfide interchange protein, periplasmic, at 597,642 to 598,403
_00573
ECD_00574: ECD_00574 - alkyl hydroperoxide reductase, C22 subunit, at 598,775 to 599,338
_00574
ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148
_00575
Position (kb) 598
599
600 Strain fitness (log2 ratio) -1
0
1 at 597.819 kb on - strand, within ECD_00573 at 597.822 kb on + strand, within ECD_00573 at 597.823 kb on - strand, within ECD_00573 at 597.840 kb on + strand, within ECD_00573 at 597.963 kb on + strand, within ECD_00573 at 597.964 kb on - strand, within ECD_00573 at 597.964 kb on - strand, within ECD_00573 at 598.049 kb on - strand, within ECD_00573 at 598.186 kb on + strand, within ECD_00573 at 598.193 kb on - strand, within ECD_00573 at 598.193 kb on - strand, within ECD_00573 at 598.211 kb on + strand, within ECD_00573 at 598.229 kb on - strand, within ECD_00573 at 598.252 kb on + strand, within ECD_00573 at 598.265 kb on - strand, within ECD_00573 at 598.405 kb on - strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.464 kb on - strand at 598.475 kb on + strand at 598.475 kb on + strand at 598.475 kb on + strand at 598.500 kb on - strand at 598.512 kb on + strand at 598.512 kb on + strand at 598.536 kb on + strand at 598.585 kb on - strand at 598.623 kb on + strand at 598.678 kb on + strand at 598.683 kb on + strand at 598.743 kb on + strand at 598.743 kb on + strand at 598.744 kb on - strand at 598.772 kb on + strand at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.986 kb on + strand, within ECD_00574 at 598.990 kb on + strand, within ECD_00574 at 599.092 kb on + strand, within ECD_00574 at 599.243 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.329 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.405 kb on + strand at 599.405 kb on + strand at 599.676 kb on - strand at 599.747 kb on + strand, within ECD_00575 at 599.748 kb on - strand, within ECD_00575 at 599.766 kb on - strand, within ECD_00575 at 599.972 kb on + strand, within ECD_00575 at 599.973 kb on - strand, within ECD_00575 at 600.013 kb on + strand, within ECD_00575 at 600.219 kb on + strand, within ECD_00575 at 600.220 kb on - strand, within ECD_00575 at 600.282 kb on - strand, within ECD_00575
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 597,819 - ECD_00573 0.23 +0.0 597,822 + ECD_00573 0.24 -0.1 597,823 - ECD_00573 0.24 +0.2 597,840 + ECD_00573 0.26 -0.9 597,963 + ECD_00573 0.42 +0.4 597,964 - ECD_00573 0.42 -0.2 597,964 - ECD_00573 0.42 +0.2 598,049 - ECD_00573 0.53 +0.8 598,186 + ECD_00573 0.71 -0.6 598,193 - ECD_00573 0.72 -0.6 598,193 - ECD_00573 0.72 +0.0 598,211 + ECD_00573 0.75 -0.1 598,229 - ECD_00573 0.77 +0.1 598,252 + ECD_00573 0.80 +0.3 598,265 - ECD_00573 0.82 -0.2 598,405 - +1.2 598,452 + +0.8 598,452 + +0.1 598,464 - -0.2 598,475 + -0.0 598,475 + -0.2 598,475 + +0.2 598,500 - +0.9 598,512 + +0.1 598,512 + +0.4 598,536 + +0.3 598,585 - -0.7 598,623 + -0.2 598,678 + +0.6 598,683 + -0.3 598,743 + +0.1 598,743 + -0.2 598,744 - -0.2 598,772 + +0.1 598,977 + ECD_00574 0.36 -0.5 598,977 + ECD_00574 0.36 -1.4 598,977 + ECD_00574 0.36 -1.2 598,977 + ECD_00574 0.36 -0.9 598,986 + ECD_00574 0.37 -0.6 598,990 + ECD_00574 0.38 -0.1 599,092 + ECD_00574 0.56 +0.8 599,243 + ECD_00574 0.83 -1.0 599,247 + ECD_00574 0.84 -0.6 599,247 + ECD_00574 0.84 -0.4 599,329 + +0.9 599,397 + -0.3 599,397 + +0.1 599,397 + +0.2 599,405 + -0.2 599,405 + +0.8 599,676 - +0.6 599,747 + ECD_00575 0.10 -0.2 599,748 - ECD_00575 0.11 -0.9 599,766 - ECD_00575 0.12 +0.6 599,972 + ECD_00575 0.25 +1.2 599,973 - ECD_00575 0.25 -0.7 600,013 + ECD_00575 0.27 +1.1 600,219 + ECD_00575 0.41 -1.0 600,220 - ECD_00575 0.41 +1.2 600,282 - ECD_00575 0.45 -0.1
Or see this region's nucleotide sequence