Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00551 and ECD_00552 are separated by 2 nucleotides ECD_00552 and ECD_00553 overlap by 4 nucleotides ECD_00553 and ECD_00554 are separated by 215 nucleotides
ECD_00551: ECD_00551 - enterobactin/ferrienterobactin esterase, at 573,224 to 574,426
_00551
ECD_00552: ECD_00552 - stimulator of EntF adenylation activity, MbtH-like, at 574,429 to 574,647
_00552
ECD_00553: ECD_00553 - enterobactin synthase multienzyme complex component, ATP-dependent, at 574,644 to 578,525
_00553
ECD_00554: ECD_00554 - regulator of length of O-antigen component of lipopolysaccharide chains, at 578,741 to 579,874
_00554
Position (kb) 574
575
576
577
578
579 Strain fitness (log2 ratio) -1
0
1 at 573.909 kb on - strand, within ECD_00551 at 573.962 kb on - strand, within ECD_00551 at 574.028 kb on - strand, within ECD_00551 at 574.125 kb on + strand, within ECD_00551 at 574.299 kb on + strand, within ECD_00551 at 574.475 kb on + strand, within ECD_00552 at 574.475 kb on + strand, within ECD_00552 at 574.657 kb on + strand at 574.738 kb on - strand at 574.812 kb on - strand at 575.173 kb on + strand, within ECD_00553 at 575.312 kb on + strand, within ECD_00553 at 575.336 kb on + strand, within ECD_00553 at 575.448 kb on + strand, within ECD_00553 at 575.449 kb on - strand, within ECD_00553 at 575.702 kb on - strand, within ECD_00553 at 575.844 kb on + strand, within ECD_00553 at 575.942 kb on + strand, within ECD_00553 at 575.942 kb on + strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 575.943 kb on - strand, within ECD_00553 at 576.311 kb on - strand, within ECD_00553 at 576.314 kb on + strand, within ECD_00553 at 576.314 kb on + strand, within ECD_00553 at 576.372 kb on + strand, within ECD_00553 at 576.373 kb on - strand, within ECD_00553 at 576.373 kb on - strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.438 kb on + strand, within ECD_00553 at 576.440 kb on + strand, within ECD_00553 at 576.441 kb on - strand, within ECD_00553 at 576.441 kb on - strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.449 kb on + strand, within ECD_00553 at 576.450 kb on - strand, within ECD_00553 at 576.807 kb on - strand, within ECD_00553 at 576.832 kb on + strand, within ECD_00553 at 576.853 kb on + strand, within ECD_00553 at 576.872 kb on + strand, within ECD_00553 at 576.873 kb on - strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.877 kb on + strand, within ECD_00553 at 576.878 kb on - strand, within ECD_00553 at 576.902 kb on - strand, within ECD_00553 at 576.998 kb on + strand, within ECD_00553 at 577.050 kb on + strand, within ECD_00553 at 577.149 kb on + strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.150 kb on - strand, within ECD_00553 at 577.366 kb on - strand, within ECD_00553 at 577.442 kb on + strand, within ECD_00553 at 577.443 kb on - strand, within ECD_00553 at 577.477 kb on + strand, within ECD_00553 at 578.138 kb on + strand at 578.138 kb on + strand at 578.180 kb on + strand at 578.292 kb on + strand at 578.346 kb on - strand at 578.388 kb on - strand at 578.436 kb on + strand at 579.328 kb on + strand, within ECD_00554
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 573,909 - ECD_00551 0.57 -0.7 573,962 - ECD_00551 0.61 -0.8 574,028 - ECD_00551 0.67 +0.0 574,125 + ECD_00551 0.75 -0.4 574,299 + ECD_00551 0.89 -0.0 574,475 + ECD_00552 0.21 +0.5 574,475 + ECD_00552 0.21 +0.7 574,657 + -0.3 574,738 - -0.2 574,812 - +0.2 575,173 + ECD_00553 0.14 -0.8 575,312 + ECD_00553 0.17 +1.1 575,336 + ECD_00553 0.18 +0.6 575,448 + ECD_00553 0.21 -0.2 575,449 - ECD_00553 0.21 +0.9 575,702 - ECD_00553 0.27 -1.3 575,844 + ECD_00553 0.31 -1.1 575,942 + ECD_00553 0.33 +1.4 575,942 + ECD_00553 0.33 -0.3 575,943 - ECD_00553 0.33 +0.9 575,943 - ECD_00553 0.33 +0.1 575,943 - ECD_00553 0.33 -0.2 575,943 - ECD_00553 0.33 +0.4 575,943 - ECD_00553 0.33 -0.4 575,943 - ECD_00553 0.33 -0.2 576,311 - ECD_00553 0.43 +0.2 576,314 + ECD_00553 0.43 -1.1 576,314 + ECD_00553 0.43 +0.4 576,372 + ECD_00553 0.45 +0.0 576,373 - ECD_00553 0.45 -0.1 576,373 - ECD_00553 0.45 +0.8 576,438 + ECD_00553 0.46 -0.0 576,438 + ECD_00553 0.46 -0.6 576,438 + ECD_00553 0.46 +0.3 576,438 + ECD_00553 0.46 +0.5 576,440 + ECD_00553 0.46 +0.6 576,441 - ECD_00553 0.46 +0.1 576,441 - ECD_00553 0.46 -0.2 576,449 + ECD_00553 0.46 -0.8 576,449 + ECD_00553 0.46 -0.0 576,449 + ECD_00553 0.46 -0.4 576,450 - ECD_00553 0.47 -0.9 576,807 - ECD_00553 0.56 -0.1 576,832 + ECD_00553 0.56 +0.2 576,853 + ECD_00553 0.57 -0.7 576,872 + ECD_00553 0.57 -0.1 576,873 - ECD_00553 0.57 -0.6 576,877 + ECD_00553 0.58 +0.1 576,877 + ECD_00553 0.58 -0.2 576,877 + ECD_00553 0.58 -0.4 576,877 + ECD_00553 0.58 -0.6 576,877 + ECD_00553 0.58 -0.1 576,878 - ECD_00553 0.58 +0.1 576,902 - ECD_00553 0.58 -0.4 576,998 + ECD_00553 0.61 +0.3 577,050 + ECD_00553 0.62 -1.4 577,149 + ECD_00553 0.65 -1.1 577,150 - ECD_00553 0.65 +0.2 577,150 - ECD_00553 0.65 -0.9 577,150 - ECD_00553 0.65 -0.2 577,366 - ECD_00553 0.70 +0.0 577,442 + ECD_00553 0.72 -0.3 577,443 - ECD_00553 0.72 +0.2 577,477 + ECD_00553 0.73 -0.1 578,138 + -0.6 578,138 + -0.1 578,180 + +0.7 578,292 + +0.5 578,346 - -0.4 578,388 - -0.2 578,436 + -0.5 579,328 + ECD_00554 0.52 -0.1
Or see this region's nucleotide sequence