Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00550 and ECD_00551 are separated by 243 nucleotides ECD_00551 and ECD_00552 are separated by 2 nucleotides ECD_00552 and ECD_00553 overlap by 4 nucleotides
ECD_00550: ECD_00550 - ferrienterobactin outer membrane transporter, at 570,740 to 572,980
_00550
ECD_00551: ECD_00551 - enterobactin/ferrienterobactin esterase, at 573,224 to 574,426
_00551
ECD_00552: ECD_00552 - stimulator of EntF adenylation activity, MbtH-like, at 574,429 to 574,647
_00552
ECD_00553: ECD_00553 - enterobactin synthase multienzyme complex component, ATP-dependent, at 574,644 to 578,525
_00553
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.417 kb on - strand, within ECD_00550 at 572.417 kb on - strand, within ECD_00550 at 572.585 kb on - strand, within ECD_00550 at 572.696 kb on - strand, within ECD_00550 at 572.847 kb on - strand at 572.875 kb on + strand at 572.876 kb on - strand at 572.876 kb on - strand at 572.876 kb on - strand at 572.876 kb on - strand at 572.876 kb on - strand at 572.879 kb on - strand at 572.900 kb on - strand at 572.931 kb on + strand at 572.932 kb on - strand at 573.100 kb on - strand at 573.100 kb on - strand at 573.503 kb on - strand, within ECD_00551 at 573.503 kb on - strand, within ECD_00551 at 573.580 kb on - strand, within ECD_00551 at 573.613 kb on - strand, within ECD_00551 at 573.909 kb on - strand, within ECD_00551 at 573.962 kb on - strand, within ECD_00551 at 574.028 kb on - strand, within ECD_00551 at 574.125 kb on + strand, within ECD_00551 at 574.299 kb on + strand, within ECD_00551 at 574.475 kb on + strand, within ECD_00552 at 574.475 kb on + strand, within ECD_00552 at 574.657 kb on + strand at 574.738 kb on - strand at 574.812 kb on - strand at 575.173 kb on + strand, within ECD_00553 at 575.312 kb on + strand, within ECD_00553 at 575.336 kb on + strand, within ECD_00553
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 572,417 - ECD_00550 0.75 -0.2 572,417 - ECD_00550 0.75 -0.1 572,585 - ECD_00550 0.82 -0.1 572,696 - ECD_00550 0.87 -0.2 572,847 - +0.0 572,875 + +0.9 572,876 - -0.5 572,876 - +0.5 572,876 - +0.5 572,876 - +0.6 572,876 - -0.1 572,879 - +0.7 572,900 - -0.3 572,931 + -0.1 572,932 - -0.2 573,100 - -0.2 573,100 - +2.0 573,503 - ECD_00551 0.23 -0.6 573,503 - ECD_00551 0.23 -0.5 573,580 - ECD_00551 0.30 -0.9 573,613 - ECD_00551 0.32 -1.2 573,909 - ECD_00551 0.57 -0.7 573,962 - ECD_00551 0.61 -0.8 574,028 - ECD_00551 0.67 +0.0 574,125 + ECD_00551 0.75 -0.4 574,299 + ECD_00551 0.89 -0.0 574,475 + ECD_00552 0.21 +0.5 574,475 + ECD_00552 0.21 +0.7 574,657 + -0.3 574,738 - -0.2 574,812 - +0.2 575,173 + ECD_00553 0.14 -0.8 575,312 + ECD_00553 0.17 +1.1 575,336 + ECD_00553 0.18 +0.6
Or see this region's nucleotide sequence