Strain Fitness in Escherichia coli BL21 around ECD_00549

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00548 and ECD_00549 are separated by 281 nucleotidesECD_00549 and ECD_00550 are separated by 165 nucleotides ECD_00548: ECD_00548 - IS186 hypothetical protein, at 568,551 to 569,663 _00548 ECD_00549: ECD_00549 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex, at 569,945 to 570,574 _00549 ECD_00550: ECD_00550 - ferrienterobactin outer membrane transporter, at 570,740 to 572,980 _00550 Position (kb) 569 570 571Strain fitness (log2 ratio) -1 0 1 2at 569.819 kb on + strandat 569.839 kb on + strandat 569.874 kb on + strandat 569.889 kb on - strandat 570.049 kb on + strand, within ECD_00549at 570.050 kb on - strand, within ECD_00549at 570.054 kb on - strand, within ECD_00549at 570.190 kb on + strand, within ECD_00549at 570.191 kb on - strand, within ECD_00549at 570.191 kb on - strand, within ECD_00549at 570.194 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.368 kb on - strand, within ECD_00549at 570.368 kb on - strand, within ECD_00549at 570.376 kb on - strand, within ECD_00549at 570.434 kb on - strand, within ECD_00549at 570.527 kb on - strandat 570.527 kb on - strandat 570.527 kb on - strandat 570.551 kb on - strandat 570.551 kb on - strandat 570.556 kb on + strandat 570.629 kb on + strandat 570.764 kb on - strandat 570.764 kb on - strandat 570.765 kb on + strandat 570.765 kb on + strandat 570.765 kb on + strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.772 kb on + strandat 570.773 kb on - strandat 570.789 kb on + strandat 570.789 kb on + strandat 570.789 kb on + strandat 570.790 kb on - strandat 570.790 kb on - strandat 570.796 kb on - strandat 570.816 kb on + strandat 570.817 kb on - strandat 570.817 kb on - strandat 571.000 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.008 kb on + strand, within ECD_00550at 571.100 kb on - strand, within ECD_00550at 571.100 kb on - strand, within ECD_00550at 571.156 kb on + strand, within ECD_00550at 571.156 kb on + strand, within ECD_00550at 571.157 kb on - strand, within ECD_00550at 571.157 kb on - strand, within ECD_00550at 571.158 kb on + strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.169 kb on - strand, within ECD_00550at 571.421 kb on - strand, within ECD_00550at 571.431 kb on + strand, within ECD_00550at 571.432 kb on - strand, within ECD_00550at 571.432 kb on - strand, within ECD_00550at 571.452 kb on + strand, within ECD_00550at 571.453 kb on - strand, within ECD_00550at 571.474 kb on - strand, within ECD_00550at 571.483 kb on - strand, within ECD_00550at 571.483 kb on - strand, within ECD_00550at 571.516 kb on + strand, within ECD_00550at 571.517 kb on - strand, within ECD_00550at 571.560 kb on - strand, within ECD_00550

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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569,819 + -0.0
569,839 + +0.4
569,874 + +1.2
569,889 - -0.5
570,049 + ECD_00549 0.17 +0.1
570,050 - ECD_00549 0.17 +0.2
570,054 - ECD_00549 0.17 +0.2
570,190 + ECD_00549 0.39 +0.6
570,191 - ECD_00549 0.39 -0.8
570,191 - ECD_00549 0.39 -0.8
570,194 - ECD_00549 0.40 +0.5
570,313 - ECD_00549 0.58 +1.1
570,313 - ECD_00549 0.58 +1.0
570,313 - ECD_00549 0.58 +0.3
570,368 - ECD_00549 0.67 -0.3
570,368 - ECD_00549 0.67 +0.7
570,376 - ECD_00549 0.68 +0.2
570,434 - ECD_00549 0.78 +0.1
570,527 - -0.5
570,527 - +1.1
570,527 - -0.4
570,551 - -0.4
570,551 - +0.8
570,556 + +0.4
570,629 + +0.4
570,764 - -0.3
570,764 - -0.2
570,765 + +1.2
570,765 + -1.0
570,765 + +0.2
570,766 - +0.2
570,766 - +0.2
570,766 - -0.1
570,766 - +0.1
570,766 - +0.3
570,766 - +0.3
570,766 - +0.1
570,766 - +0.0
570,766 - -0.1
570,772 + -0.7
570,773 - +0.8
570,789 + +0.6
570,789 + +0.3
570,789 + -0.5
570,790 - -1.2
570,790 - -0.3
570,796 - -0.0
570,816 + -0.4
570,817 - +1.7
570,817 - +0.2
571,000 + ECD_00550 0.12 -0.2
571,002 + ECD_00550 0.12 -1.0
571,002 + ECD_00550 0.12 -0.7
571,002 + ECD_00550 0.12 -0.2
571,002 + ECD_00550 0.12 -0.1
571,002 + ECD_00550 0.12 -0.5
571,003 - ECD_00550 0.12 -0.3
571,003 - ECD_00550 0.12 -0.3
571,003 - ECD_00550 0.12 +0.7
571,008 + ECD_00550 0.12 -0.1
571,100 - ECD_00550 0.16 +0.3
571,100 - ECD_00550 0.16 +0.1
571,156 + ECD_00550 0.19 -0.5
571,156 + ECD_00550 0.19 -0.4
571,157 - ECD_00550 0.19 +0.3
571,157 - ECD_00550 0.19 -0.3
571,158 + ECD_00550 0.19 -1.2
571,159 - ECD_00550 0.19 -0.4
571,159 - ECD_00550 0.19 -0.3
571,159 - ECD_00550 0.19 -0.3
571,159 - ECD_00550 0.19 +0.2
571,159 - ECD_00550 0.19 -0.0
571,159 - ECD_00550 0.19 -1.1
571,159 - ECD_00550 0.19 -0.1
571,169 - ECD_00550 0.19 +0.4
571,421 - ECD_00550 0.30 +0.0
571,431 + ECD_00550 0.31 +0.3
571,432 - ECD_00550 0.31 +0.5
571,432 - ECD_00550 0.31 -0.4
571,452 + ECD_00550 0.32 +0.4
571,453 - ECD_00550 0.32 +0.0
571,474 - ECD_00550 0.33 +0.2
571,483 - ECD_00550 0.33 +0.3
571,483 - ECD_00550 0.33 +0.2
571,516 + ECD_00550 0.35 -0.2
571,517 - ECD_00550 0.35 +0.4
571,560 - ECD_00550 0.37 +1.9

Or see this region's nucleotide sequence