Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00506 and ECD_00507 overlap by 1 nucleotides ECD_00507 and ECD_00508 overlap by 4 nucleotides ECD_00508 and ECD_00509 are separated by 31 nucleotides ECD_00509 and ECD_00510 are separated by 360 nucleotides
ECD_00506: ECD_00506 - DLP12 prophage; putative phage lysis protein, at 545,572 to 545,787
_00506
ECD_00507: ECD_00507 - DLP12 prophage; putative lysozyme, at 545,787 to 546,284
_00507
ECD_00508: ECD_00508 - DLP12 prophage; putative murein endopeptidase, at 546,281 to 546,742
_00508
ECD_00509: ECD_00509 - DLP12 prophage; putative lipoprotein, at 546,774 to 547,067
_00509
ECD_00510: ECD_00510 - hypothetical protein, at 547,428 to 547,622
_00510
Position (kb) 546
547 Strain fitness (log2 ratio) -2
-1
0
1 at 545.523 kb on + strand at 545.687 kb on + strand, within ECD_00506 at 545.687 kb on + strand, within ECD_00506 at 545.687 kb on + strand, within ECD_00506 at 545.752 kb on - strand, within ECD_00506 at 545.785 kb on + strand at 545.843 kb on + strand, within ECD_00507 at 545.845 kb on + strand, within ECD_00507 at 545.845 kb on + strand, within ECD_00507 at 545.902 kb on - strand, within ECD_00507 at 545.905 kb on + strand, within ECD_00507 at 545.906 kb on - strand, within ECD_00507 at 545.918 kb on + strand, within ECD_00507 at 545.939 kb on - strand, within ECD_00507 at 546.055 kb on + strand, within ECD_00507 at 546.055 kb on + strand, within ECD_00507 at 546.065 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.204 kb on + strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.205 kb on - strand, within ECD_00507 at 546.302 kb on - strand at 546.496 kb on - strand, within ECD_00508 at 547.029 kb on - strand, within ECD_00509 at 547.071 kb on - strand at 547.153 kb on + strand at 547.255 kb on + strand at 547.267 kb on - strand at 547.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 545,523 + +0.8 545,687 + ECD_00506 0.53 -1.3 545,687 + ECD_00506 0.53 +1.2 545,687 + ECD_00506 0.53 -1.7 545,752 - ECD_00506 0.83 -0.7 545,785 + +0.2 545,843 + ECD_00507 0.11 +0.6 545,845 + ECD_00507 0.12 -1.8 545,845 + ECD_00507 0.12 -0.7 545,902 - ECD_00507 0.23 +0.7 545,905 + ECD_00507 0.24 +0.5 545,906 - ECD_00507 0.24 -0.7 545,918 + ECD_00507 0.26 +0.7 545,939 - ECD_00507 0.31 +0.5 546,055 + ECD_00507 0.54 +0.5 546,055 + ECD_00507 0.54 +0.5 546,065 + ECD_00507 0.56 -0.4 546,204 + ECD_00507 0.84 -0.3 546,204 + ECD_00507 0.84 -0.6 546,204 + ECD_00507 0.84 +0.4 546,205 - ECD_00507 0.84 +0.4 546,205 - ECD_00507 0.84 +1.5 546,205 - ECD_00507 0.84 +0.7 546,302 - -0.6 546,496 - ECD_00508 0.47 +0.5 547,029 - ECD_00509 0.87 +0.4 547,071 - +0.1 547,153 + +0.7 547,255 + +0.4 547,267 - -0.3 547,717 + -0.8
Or see this region's nucleotide sequence