Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00483 and ECD_00484 are separated by 10 nucleotides ECD_00484 and ECD_00485 are separated by 2 nucleotides ECD_00485 and ECD_t00007 are separated by 242 nucleotides ECD_t00007 and ECD_00486 are separated by 15 nucleotides
ECD_00483: ECD_00483 - FimA-like protein, at 531,435 to 532,412
_00483
ECD_00484: ECD_00484 - FimA-like protein, at 532,423 to 532,938
_00484
ECD_00485: ECD_00485 - response regulator family protein, at 532,941 to 533,573
_00485
ECD_t00007: ECD_t00007 - tRNA-Arg, at 533,816 to 533,892
_t00007
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
Position (kb) 532
533 Strain fitness (log2 ratio) -1
0
1 at 531.915 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 531.959 kb on + strand, within ECD_00483 at 532.274 kb on + strand, within ECD_00483 at 532.493 kb on + strand, within ECD_00484 at 532.547 kb on + strand, within ECD_00484 at 532.604 kb on + strand, within ECD_00484 at 532.865 kb on - strand, within ECD_00484 at 533.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 531,915 + ECD_00483 0.49 +0.1 531,959 + ECD_00483 0.54 +0.1 531,959 + ECD_00483 0.54 +0.4 532,274 + ECD_00483 0.86 -0.6 532,493 + ECD_00484 0.14 +0.7 532,547 + ECD_00484 0.24 +1.0 532,604 + ECD_00484 0.35 +0.2 532,865 - ECD_00484 0.86 +0.5 533,534 + -1.2
Or see this region's nucleotide sequence