Strain Fitness in Escherichia coli BL21 around ECD_00450

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00448 and ECD_00449 are separated by 39 nucleotidesECD_00449 and ECD_00450 overlap by 1 nucleotidesECD_00450 and ECD_00451 overlap by 20 nucleotidesECD_00451 and ECD_00452 are separated by 743 nucleotides ECD_00448: ECD_00448 - Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor, at 492,407 to 496,687 _00448 ECD_00449: ECD_00449 - putative immunity protein, at 496,727 to 497,095 _00449 ECD_00450: ECD_00450 - conserved protein, rhs-like protein, at 497,095 to 497,805 _00450 ECD_00451: ECD_00451 - hypothetical protein, at 497,786 to 498,046 _00451 ECD_00452: ECD_00452 - putative DNA-binding transcriptional regulator, at 498,790 to 499,161 _00452 Position (kb) 497 498Strain fitness (log2 ratio) -1 0 1at 496.217 kb on - strand, within ECD_00448at 496.217 kb on - strand, within ECD_00448at 496.247 kb on - strand, within ECD_00448at 496.328 kb on - strandat 497.143 kb on + strandat 497.243 kb on - strand, within ECD_00450at 497.397 kb on - strand, within ECD_00450

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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496,217 - ECD_00448 0.89 +0.6
496,217 - ECD_00448 0.89 +0.9
496,247 - ECD_00448 0.90 -0.5
496,328 - -0.7
497,143 + -0.9
497,243 - ECD_00450 0.21 +0.0
497,397 - ECD_00450 0.42 -1.1

Or see this region's nucleotide sequence