Strain Fitness in Escherichia coli BL21 around ECD_00415

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00414 and ECD_00415 are separated by 141 nucleotidesECD_00415 and ECD_00416 are separated by 127 nucleotides ECD_00414: ECD_00414 - multidrug efflux system, at 453,472 to 454,665 _00414 ECD_00415: ECD_00415 - transcriptional repressor, at 454,807 to 455,454 _00415 ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944 _00416 Position (kb) 454 455 456Strain fitness (log2 ratio) -2 -1 0 1at 453.847 kb on - strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.029 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.148 kb on + strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.256 kb on + strand, within ECD_00414at 454.352 kb on + strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414at 454.538 kb on - strand, within ECD_00414at 454.538 kb on - strand, within ECD_00414at 454.541 kb on - strand, within ECD_00414at 454.669 kb on + strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.713 kb on + strandat 454.714 kb on - strandat 454.734 kb on + strandat 454.735 kb on - strandat 454.735 kb on - strandat 454.736 kb on + strandat 454.737 kb on - strandat 454.759 kb on + strandat 454.759 kb on + strandat 454.792 kb on + strandat 454.806 kb on + strandat 454.807 kb on - strandat 455.024 kb on + strand, within ECD_00415at 455.081 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.199 kb on + strand, within ECD_00415at 455.200 kb on - strand, within ECD_00415at 455.250 kb on + strand, within ECD_00415at 455.316 kb on + strand, within ECD_00415at 455.410 kb on + strandat 455.411 kb on - strandat 455.588 kb on - strandat 455.588 kb on - strandat 455.600 kb on + strandat 455.635 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.800 kb on + strandat 455.801 kb on - strandat 455.801 kb on - strandat 455.917 kb on + strandat 455.917 kb on + strandat 455.917 kb on + strandat 455.918 kb on - strandat 456.041 kb on + strand, within ECD_00416at 456.042 kb on - strand, within ECD_00416at 456.043 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.098 kb on + strand, within ECD_00416at 456.099 kb on - strand, within ECD_00416at 456.099 kb on - strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.168 kb on + strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.169 kb on - strand, within ECD_00416at 456.271 kb on + strand, within ECD_00416at 456.272 kb on - strand, within ECD_00416at 456.293 kb on + strand, within ECD_00416at 456.294 kb on - strand, within ECD_00416at 456.330 kb on + strand, within ECD_00416at 456.331 kb on - strand, within ECD_00416

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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453,847 - ECD_00414 0.31 -0.4
454,028 + ECD_00414 0.47 -1.5
454,028 + ECD_00414 0.47 -0.1
454,029 - ECD_00414 0.47 -0.5
454,082 - ECD_00414 0.51 +0.5
454,082 - ECD_00414 0.51 +1.6
454,111 - ECD_00414 0.54 +0.2
454,111 - ECD_00414 0.54 +0.0
454,148 + ECD_00414 0.57 +0.3
454,239 - ECD_00414 0.64 +0.3
454,239 - ECD_00414 0.64 +1.0
454,239 - ECD_00414 0.64 -0.3
454,256 + ECD_00414 0.66 -1.2
454,352 + ECD_00414 0.74 +0.2
454,353 - ECD_00414 0.74 +0.3
454,353 - ECD_00414 0.74 +0.0
454,353 - ECD_00414 0.74 -0.8
454,365 - ECD_00414 0.75 -0.1
454,365 - ECD_00414 0.75 +0.4
454,538 - ECD_00414 0.89 +1.0
454,538 - ECD_00414 0.89 +0.2
454,541 - ECD_00414 0.90 +0.5
454,669 + -0.2
454,670 - -0.4
454,670 - -2.3
454,670 - -0.9
454,713 + +0.3
454,714 - -0.0
454,734 + +1.1
454,735 - +1.0
454,735 - -0.0
454,736 + +0.9
454,737 - -0.0
454,759 + +0.3
454,759 + -0.2
454,792 + +1.1
454,806 + +0.0
454,807 - -0.3
455,024 + ECD_00415 0.33 -0.0
455,081 + ECD_00415 0.42 -0.4
455,084 + ECD_00415 0.43 +0.4
455,084 + ECD_00415 0.43 -0.8
455,142 + ECD_00415 0.52 -0.5
455,142 + ECD_00415 0.52 +0.5
455,142 + ECD_00415 0.52 -0.4
455,199 + ECD_00415 0.60 +0.0
455,200 - ECD_00415 0.61 +1.0
455,250 + ECD_00415 0.68 +0.1
455,316 + ECD_00415 0.79 +0.4
455,410 + -0.3
455,411 - +0.1
455,588 - -0.3
455,588 - +0.0
455,600 + -0.3
455,635 + -0.3
455,800 + -0.3
455,800 + -1.2
455,800 + -1.1
455,800 + -0.3
455,801 - -1.3
455,801 - -0.4
455,917 + -0.3
455,917 + -1.3
455,917 + -0.2
455,918 - -1.4
456,041 + ECD_00416 0.14 -0.7
456,042 - ECD_00416 0.14 -0.1
456,043 + ECD_00416 0.14 -0.6
456,098 + ECD_00416 0.15 +0.6
456,098 + ECD_00416 0.15 +0.0
456,098 + ECD_00416 0.15 +0.6
456,098 + ECD_00416 0.15 -0.0
456,098 + ECD_00416 0.15 -0.2
456,099 - ECD_00416 0.15 +0.0
456,099 - ECD_00416 0.15 +0.4
456,168 + ECD_00416 0.17 -0.2
456,168 + ECD_00416 0.17 -0.9
456,168 + ECD_00416 0.17 -0.4
456,168 + ECD_00416 0.17 +0.1
456,168 + ECD_00416 0.17 -0.4
456,169 - ECD_00416 0.17 -0.4
456,169 - ECD_00416 0.17 -1.0
456,169 - ECD_00416 0.17 -0.3
456,271 + ECD_00416 0.20 -0.3
456,272 - ECD_00416 0.21 -1.0
456,293 + ECD_00416 0.21 -0.1
456,294 - ECD_00416 0.21 -1.8
456,330 + ECD_00416 0.22 -0.7
456,331 - ECD_00416 0.22 -0.6

Or see this region's nucleotide sequence