Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00393 and ECD_00394 are separated by 150 nucleotides ECD_00394 and ECD_00395 are separated by 105 nucleotides ECD_00395 and ECD_00396 are separated by 51 nucleotides ECD_00396 and ECD_00397 are separated by 64 nucleotides
ECD_00393: ECD_00393 - periplasmic folding chaperone, has an inactive PPIase domain, at 430,949 to 432,820
_00393
ECD_00394: ECD_00394 - putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein, at 432,971 to 433,342
_00394
ECD_00395: ECD_00395 - long-chain acyl-CoA thioesterase III, at 433,448 to 433,846
_00395
ECD_00396: ECD_00396 - 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis, at 433,898 to 434,593
_00396
ECD_00397: ECD_00397 - putative ABC transporter periplasmic binding protein, at 434,658 to 436,358
_00397
Position (kb) 433
434 Strain fitness (log2 ratio) -1
0
1 at 432.818 kb on + strand at 432.949 kb on + strand at 432.985 kb on + strand at 432.986 kb on - strand at 433.075 kb on - strand, within ECD_00394 at 433.120 kb on - strand, within ECD_00394 at 433.165 kb on + strand, within ECD_00394 at 433.165 kb on + strand, within ECD_00394 at 433.238 kb on + strand, within ECD_00394 at 433.251 kb on - strand, within ECD_00394 at 433.404 kb on + strand at 433.404 kb on + strand at 433.408 kb on + strand at 433.408 kb on + strand at 433.409 kb on - strand at 433.409 kb on - strand at 433.409 kb on - strand at 433.411 kb on - strand at 433.420 kb on + strand at 433.420 kb on + strand at 433.420 kb on + strand at 433.422 kb on + strand at 433.433 kb on + strand at 433.433 kb on + strand at 433.434 kb on - strand at 433.491 kb on - strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.657 kb on - strand, within ECD_00395 at 433.660 kb on + strand, within ECD_00395 at 433.661 kb on - strand, within ECD_00395 at 433.661 kb on - strand, within ECD_00395 at 433.664 kb on - strand, within ECD_00395 at 433.664 kb on - strand, within ECD_00395 at 433.704 kb on + strand, within ECD_00395 at 433.717 kb on + strand, within ECD_00395 at 433.780 kb on + strand, within ECD_00395 at 433.900 kb on - strand at 433.956 kb on + strand at 433.956 kb on + strand at 434.029 kb on - strand, within ECD_00396 at 434.265 kb on + strand, within ECD_00396 at 434.265 kb on + strand, within ECD_00396 at 434.265 kb on + strand, within ECD_00396 at 434.265 kb on + strand, within ECD_00396 at 434.265 kb on + strand, within ECD_00396 at 434.266 kb on - strand, within ECD_00396 at 434.266 kb on - strand, within ECD_00396 at 434.266 kb on - strand, within ECD_00396 at 434.266 kb on - strand, within ECD_00396 at 434.267 kb on + strand, within ECD_00396 at 434.294 kb on - strand, within ECD_00396 at 434.294 kb on - strand, within ECD_00396 at 434.406 kb on - strand, within ECD_00396 at 434.406 kb on - strand, within ECD_00396 at 434.419 kb on + strand, within ECD_00396 at 434.520 kb on + strand, within ECD_00396 at 434.521 kb on - strand, within ECD_00396 at 434.521 kb on - strand, within ECD_00396 at 434.529 kb on - strand at 434.529 kb on - strand at 434.655 kb on + strand at 434.656 kb on - strand at 434.748 kb on - strand at 434.796 kb on + strand at 434.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 432,818 + -0.2 432,949 + -0.2 432,985 + +0.7 432,986 - -1.0 433,075 - ECD_00394 0.28 +0.2 433,120 - ECD_00394 0.40 -0.2 433,165 + ECD_00394 0.52 -0.1 433,165 + ECD_00394 0.52 -0.2 433,238 + ECD_00394 0.72 +0.9 433,251 - ECD_00394 0.75 -0.4 433,404 + +0.3 433,404 + +0.6 433,408 + +0.3 433,408 + +0.8 433,409 - -0.6 433,409 - +0.9 433,409 - +0.3 433,411 - +0.6 433,420 + -0.6 433,420 + +0.4 433,420 + +0.4 433,422 + +0.5 433,433 + -0.2 433,433 + +0.3 433,434 - +0.0 433,491 - ECD_00395 0.11 +0.4 433,621 + ECD_00395 0.43 -0.2 433,621 + ECD_00395 0.43 -0.8 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,622 - ECD_00395 0.44 -0.2 433,622 - ECD_00395 0.44 +0.0 433,622 - ECD_00395 0.44 +0.3 433,622 - ECD_00395 0.44 +0.8 433,657 - ECD_00395 0.52 +1.1 433,660 + ECD_00395 0.53 +1.3 433,661 - ECD_00395 0.53 +0.1 433,661 - ECD_00395 0.53 +0.0 433,664 - ECD_00395 0.54 -0.2 433,664 - ECD_00395 0.54 -1.2 433,704 + ECD_00395 0.64 +0.2 433,717 + ECD_00395 0.67 +0.0 433,780 + ECD_00395 0.83 +0.2 433,900 - -0.3 433,956 + -0.0 433,956 + +0.1 434,029 - ECD_00396 0.19 -0.4 434,265 + ECD_00396 0.53 +0.1 434,265 + ECD_00396 0.53 -0.6 434,265 + ECD_00396 0.53 +0.4 434,265 + ECD_00396 0.53 +0.2 434,265 + ECD_00396 0.53 -0.2 434,266 - ECD_00396 0.53 +0.1 434,266 - ECD_00396 0.53 +0.1 434,266 - ECD_00396 0.53 -0.1 434,266 - ECD_00396 0.53 -0.3 434,267 + ECD_00396 0.53 +0.6 434,294 - ECD_00396 0.57 -0.2 434,294 - ECD_00396 0.57 -0.3 434,406 - ECD_00396 0.73 +0.4 434,406 - ECD_00396 0.73 +0.1 434,419 + ECD_00396 0.75 +0.5 434,520 + ECD_00396 0.89 -0.2 434,521 - ECD_00396 0.90 +0.4 434,521 - ECD_00396 0.90 -0.0 434,529 - +0.4 434,529 - -0.3 434,655 + +0.2 434,656 - -0.8 434,748 - -1.0 434,796 + +1.3 434,826 - -1.4
Or see this region's nucleotide sequence