Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00391 and ECD_00392 are separated by 208 nucleotides ECD_00392 and ECD_00393 are separated by 191 nucleotides ECD_00393 and ECD_00394 are separated by 150 nucleotides ECD_00394 and ECD_00395 are separated by 105 nucleotides
ECD_00391: ECD_00391 - DNA-binding ATP-dependent protease La, at 427,922 to 430,276
_00391
ECD_00392: ECD_00392 - HU, DNA-binding transcriptional regulator, beta subunit, at 430,485 to 430,757
_00392
ECD_00393: ECD_00393 - periplasmic folding chaperone, has an inactive PPIase domain, at 430,949 to 432,820
_00393
ECD_00394: ECD_00394 - putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein, at 432,971 to 433,342
_00394
ECD_00395: ECD_00395 - long-chain acyl-CoA thioesterase III, at 433,448 to 433,846
_00395
Position (kb)
430
431
432
433 Strain fitness (log2 ratio)
-1
0
1 at 429.970 kb on + strand, within ECD_00391 at 429.970 kb on + strand, within ECD_00391 at 429.971 kb on - strand, within ECD_00391 at 429.971 kb on - strand, within ECD_00391 at 430.173 kb on + strand at 430.173 kb on + strand at 430.173 kb on + strand at 430.358 kb on + strand at 430.359 kb on - strand at 430.386 kb on - strand at 430.398 kb on - strand at 430.418 kb on - strand at 430.419 kb on + strand at 430.419 kb on + strand at 430.420 kb on - strand at 430.420 kb on - strand at 430.436 kb on + strand at 430.490 kb on + strand at 430.565 kb on + strand, within ECD_00392 at 430.565 kb on + strand, within ECD_00392 at 430.565 kb on + strand, within ECD_00392 at 430.566 kb on - strand, within ECD_00392 at 430.566 kb on - strand, within ECD_00392 at 430.568 kb on + strand, within ECD_00392 at 430.568 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.609 kb on + strand, within ECD_00392 at 430.706 kb on + strand, within ECD_00392 at 430.730 kb on + strand at 430.730 kb on + strand at 430.755 kb on + strand at 430.755 kb on + strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.818 kb on + strand at 430.943 kb on + strand at 431.069 kb on + strand at 431.069 kb on + strand at 431.470 kb on + strand, within ECD_00393 at 431.711 kb on + strand, within ECD_00393 at 432.048 kb on + strand, within ECD_00393 at 432.048 kb on + strand, within ECD_00393 at 432.818 kb on + strand at 432.949 kb on + strand at 432.985 kb on + strand at 432.986 kb on - strand at 433.075 kb on - strand, within ECD_00394 at 433.120 kb on - strand, within ECD_00394 at 433.165 kb on + strand, within ECD_00394 at 433.165 kb on + strand, within ECD_00394 at 433.238 kb on + strand, within ECD_00394 at 433.251 kb on - strand, within ECD_00394 at 433.404 kb on + strand at 433.404 kb on + strand at 433.408 kb on + strand at 433.408 kb on + strand at 433.409 kb on - strand at 433.409 kb on - strand at 433.409 kb on - strand at 433.411 kb on - strand at 433.420 kb on + strand at 433.420 kb on + strand at 433.420 kb on + strand at 433.422 kb on + strand at 433.433 kb on + strand at 433.433 kb on + strand at 433.434 kb on - strand at 433.491 kb on - strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.621 kb on + strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.622 kb on - strand, within ECD_00395 at 433.657 kb on - strand, within ECD_00395 at 433.660 kb on + strand, within ECD_00395 at 433.661 kb on - strand, within ECD_00395 at 433.661 kb on - strand, within ECD_00395 at 433.664 kb on - strand, within ECD_00395 at 433.664 kb on - strand, within ECD_00395 at 433.704 kb on + strand, within ECD_00395 at 433.717 kb on + strand, within ECD_00395 at 433.780 kb on + strand, within ECD_00395
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 429,970 + ECD_00391 0.87 +0.2 429,970 + ECD_00391 0.87 -0.0 429,971 - ECD_00391 0.87 +0.5 429,971 - ECD_00391 0.87 -0.5 430,173 + -0.6 430,173 + -0.5 430,173 + -0.2 430,358 + +0.9 430,359 - +0.2 430,386 - -0.6 430,398 - +0.4 430,418 - +0.2 430,419 + +0.3 430,419 + -0.4 430,420 - +0.3 430,420 - -0.1 430,436 + -0.5 430,490 + -0.6 430,565 + ECD_00392 0.29 -0.3 430,565 + ECD_00392 0.29 -0.1 430,565 + ECD_00392 0.29 -0.4 430,566 - ECD_00392 0.30 -1.0 430,566 - ECD_00392 0.30 +0.8 430,568 + ECD_00392 0.30 -0.4 430,568 + ECD_00392 0.30 +0.4 430,609 + ECD_00392 0.45 -0.5 430,609 + ECD_00392 0.45 +0.5 430,609 + ECD_00392 0.45 -0.1 430,706 + ECD_00392 0.81 -0.7 430,730 + -0.1 430,730 + -0.2 430,755 + -0.3 430,755 + -0.4 430,801 + +0.7 430,801 + +0.7 430,818 + +0.7 430,943 + -1.7 431,069 + +0.1 431,069 + -0.4 431,470 + ECD_00393 0.28 -0.9 431,711 + ECD_00393 0.41 -0.0 432,048 + ECD_00393 0.59 -1.0 432,048 + ECD_00393 0.59 -0.1 432,818 + -0.2 432,949 + -0.2 432,985 + +0.7 432,986 - -1.0 433,075 - ECD_00394 0.28 +0.2 433,120 - ECD_00394 0.40 -0.2 433,165 + ECD_00394 0.52 -0.1 433,165 + ECD_00394 0.52 -0.2 433,238 + ECD_00394 0.72 +0.9 433,251 - ECD_00394 0.75 -0.4 433,404 + +0.3 433,404 + +0.6 433,408 + +0.3 433,408 + +0.8 433,409 - -0.6 433,409 - +0.9 433,409 - +0.3 433,411 - +0.6 433,420 + -0.6 433,420 + +0.4 433,420 + +0.4 433,422 + +0.5 433,433 + -0.2 433,433 + +0.3 433,434 - +0.0 433,491 - ECD_00395 0.11 +0.4 433,621 + ECD_00395 0.43 -0.2 433,621 + ECD_00395 0.43 -0.8 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,621 + ECD_00395 0.43 +0.3 433,622 - ECD_00395 0.44 -0.2 433,622 - ECD_00395 0.44 +0.0 433,622 - ECD_00395 0.44 +0.3 433,622 - ECD_00395 0.44 +0.8 433,657 - ECD_00395 0.52 +1.1 433,660 + ECD_00395 0.53 +1.3 433,661 - ECD_00395 0.53 +0.1 433,661 - ECD_00395 0.53 +0.0 433,664 - ECD_00395 0.54 -0.2 433,664 - ECD_00395 0.54 -1.2 433,704 + ECD_00395 0.64 +0.2 433,717 + ECD_00395 0.67 +0.0 433,780 + ECD_00395 0.83 +0.2
Or see this region's nucleotide sequence