Strain Fitness in Escherichia coli BL21 around ECD_00325

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00324 and ECD_00325 are separated by 12 nucleotidesECD_00325 and ECD_00326 are separated by 58 nucleotidesECD_00326 and ECD_00327 are separated by 259 nucleotidesECD_00327 and ECD_00328 are separated by 23 nucleotides ECD_00324: ECD_00324 - peptide antibiotic transporter, at 361,264 to 362,484 _00324 ECD_00325: ECD_00325 - microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein, at 362,497 to 363,591 _00325 ECD_00326: ECD_00326 - DUF2755 family inner membrane protein, at 363,650 to 363,958 _00326 ECD_00327: ECD_00327 - DUF2754 family putative inner membrane protein, at 364,218 to 364,430 _00327 ECD_00328: ECD_00328 - D-alanine-D-alanine ligase A, at 364,454 to 365,548 _00328 Position (kb) 362 363 364Strain fitness (log2 ratio) -1 0 1 2at 361.597 kb on + strand, within ECD_00324at 361.610 kb on - strand, within ECD_00324at 361.747 kb on + strand, within ECD_00324at 361.748 kb on - strand, within ECD_00324at 361.764 kb on + strand, within ECD_00324at 361.780 kb on + strand, within ECD_00324at 361.783 kb on + strand, within ECD_00324at 361.783 kb on + strand, within ECD_00324at 361.784 kb on - strand, within ECD_00324at 361.875 kb on + strand, within ECD_00324at 362.099 kb on - strand, within ECD_00324at 362.211 kb on + strand, within ECD_00324at 362.211 kb on + strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.212 kb on - strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.215 kb on + strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.216 kb on - strand, within ECD_00324at 362.239 kb on + strand, within ECD_00324at 362.239 kb on + strand, within ECD_00324at 362.240 kb on - strand, within ECD_00324at 362.373 kb on + strandat 362.374 kb on - strandat 362.406 kb on + strandat 362.406 kb on + strandat 362.410 kb on + strandat 362.411 kb on - strandat 362.411 kb on - strandat 362.472 kb on + strandat 362.472 kb on + strandat 362.495 kb on + strandat 362.495 kb on + strandat 362.559 kb on + strandat 362.559 kb on + strandat 362.560 kb on - strandat 362.562 kb on + strandat 362.563 kb on - strandat 362.563 kb on - strandat 362.603 kb on + strandat 362.762 kb on - strand, within ECD_00325at 362.790 kb on - strand, within ECD_00325at 362.969 kb on + strand, within ECD_00325at 363.057 kb on + strand, within ECD_00325at 363.058 kb on - strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.135 kb on + strand, within ECD_00325at 363.140 kb on - strand, within ECD_00325at 363.167 kb on - strand, within ECD_00325at 363.181 kb on + strand, within ECD_00325at 363.304 kb on - strand, within ECD_00325at 363.387 kb on - strand, within ECD_00325at 363.579 kb on + strandat 363.580 kb on - strandat 363.625 kb on + strandat 363.645 kb on - strandat 363.645 kb on - strandat 363.645 kb on - strandat 363.713 kb on + strand, within ECD_00326at 364.157 kb on + strandat 364.254 kb on + strand, within ECD_00327at 364.254 kb on + strand, within ECD_00327at 364.257 kb on + strand, within ECD_00327at 364.277 kb on + strand, within ECD_00327at 364.280 kb on - strand, within ECD_00327at 364.339 kb on - strand, within ECD_00327at 364.367 kb on + strand, within ECD_00327at 364.434 kb on + strandat 364.570 kb on + strand, within ECD_00328at 364.570 kb on + strand, within ECD_00328at 364.571 kb on - strand, within ECD_00328at 364.571 kb on - strand, within ECD_00328at 364.571 kb on - strand, within ECD_00328at 364.571 kb on - strand, within ECD_00328

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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361,597 + ECD_00324 0.27 +0.6
361,610 - ECD_00324 0.28 +1.6
361,747 + ECD_00324 0.40 +1.7
361,748 - ECD_00324 0.40 +0.4
361,764 + ECD_00324 0.41 +0.1
361,780 + ECD_00324 0.42 -0.1
361,783 + ECD_00324 0.43 +0.0
361,783 + ECD_00324 0.43 +0.9
361,784 - ECD_00324 0.43 +0.1
361,875 + ECD_00324 0.50 -0.1
362,099 - ECD_00324 0.68 +0.1
362,211 + ECD_00324 0.78 +0.4
362,211 + ECD_00324 0.78 +0.2
362,212 - ECD_00324 0.78 +0.8
362,212 - ECD_00324 0.78 +0.3
362,212 - ECD_00324 0.78 +0.5
362,212 - ECD_00324 0.78 -0.1
362,215 + ECD_00324 0.78 -0.1
362,215 + ECD_00324 0.78 -0.1
362,215 + ECD_00324 0.78 +0.7
362,216 - ECD_00324 0.78 +0.8
362,216 - ECD_00324 0.78 -0.1
362,216 - ECD_00324 0.78 +0.1
362,216 - ECD_00324 0.78 +0.9
362,239 + ECD_00324 0.80 -0.7
362,239 + ECD_00324 0.80 -0.0
362,240 - ECD_00324 0.80 -0.4
362,373 + -0.5
362,374 - +0.3
362,406 + -0.8
362,406 + +0.4
362,410 + +0.4
362,411 - -0.5
362,411 - +0.1
362,472 + -0.2
362,472 + +0.1
362,495 + -1.7
362,495 + -0.1
362,559 + +0.2
362,559 + -0.4
362,560 - -0.2
362,562 + +0.3
362,563 - +0.2
362,563 - +0.3
362,603 + +0.2
362,762 - ECD_00325 0.24 -0.7
362,790 - ECD_00325 0.27 +0.3
362,969 + ECD_00325 0.43 +1.3
363,057 + ECD_00325 0.51 -0.4
363,058 - ECD_00325 0.51 +0.5
363,135 + ECD_00325 0.58 -0.3
363,135 + ECD_00325 0.58 +0.1
363,135 + ECD_00325 0.58 +0.1
363,140 - ECD_00325 0.59 +0.1
363,167 - ECD_00325 0.61 -0.0
363,181 + ECD_00325 0.62 +0.4
363,304 - ECD_00325 0.74 -0.1
363,387 - ECD_00325 0.81 -0.2
363,579 + +0.5
363,580 - +0.4
363,625 + +1.9
363,645 - -0.3
363,645 - +0.5
363,645 - -0.2
363,713 + ECD_00326 0.20 +0.1
364,157 + +0.5
364,254 + ECD_00327 0.17 +0.5
364,254 + ECD_00327 0.17 -0.2
364,257 + ECD_00327 0.18 +0.8
364,277 + ECD_00327 0.28 +0.2
364,280 - ECD_00327 0.29 +0.5
364,339 - ECD_00327 0.57 -0.5
364,367 + ECD_00327 0.70 +0.2
364,434 + -0.6
364,570 + ECD_00328 0.11 -0.1
364,570 + ECD_00328 0.11 -0.6
364,571 - ECD_00328 0.11 -0.3
364,571 - ECD_00328 0.11 -0.2
364,571 - ECD_00328 0.11 +0.2
364,571 - ECD_00328 0.11 +0.3

Or see this region's nucleotide sequence