Strain Fitness in Escherichia coli BL21 around ECD_00321

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00319 and ECD_00320 are separated by 189 nucleotidesECD_00320 and ECD_00321 are separated by 135 nucleotidesECD_00321 and ECD_00322 are separated by 87 nucleotidesECD_00322 and ECD_00323 are separated by 0 nucleotides ECD_00319: ECD_00319 - 5-aminolevulinate dehydratase (porphobilinogen synthase), at 354,640 to 355,614 _00319 ECD_00320: ECD_00320 - hypothetical protein, at 355,804 to 356,001 _00320 ECD_00321: ECD_00321 - hypothetical protein, at 356,137 to 359,043 _00321 ECD_00322: ECD_00322 - putative transcriptional regulator, at 359,131 to 359,754 _00322 ECD_00323: ECD_00323 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase, at 359,755 to 360,912 _00323 Position (kb) 356 357 358 359 360Strain fitness (log2 ratio) -1 0 1 2at 355.653 kb on - strandat 355.746 kb on - strandat 356.110 kb on + strandat 356.312 kb on + strandat 356.625 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.959 kb on + strand, within ECD_00321at 356.991 kb on + strand, within ECD_00321at 357.029 kb on + strand, within ECD_00321at 357.180 kb on - strand, within ECD_00321at 357.226 kb on + strand, within ECD_00321at 357.253 kb on + strand, within ECD_00321at 357.254 kb on - strand, within ECD_00321at 357.292 kb on + strand, within ECD_00321at 357.387 kb on + strand, within ECD_00321at 357.409 kb on - strand, within ECD_00321at 357.423 kb on + strand, within ECD_00321at 357.453 kb on + strand, within ECD_00321at 357.468 kb on + strand, within ECD_00321at 357.517 kb on + strand, within ECD_00321at 357.576 kb on + strand, within ECD_00321at 357.595 kb on + strand, within ECD_00321at 357.596 kb on - strand, within ECD_00321at 357.616 kb on - strand, within ECD_00321at 357.627 kb on + strand, within ECD_00321at 357.639 kb on - strand, within ECD_00321at 357.734 kb on + strand, within ECD_00321at 357.734 kb on + strand, within ECD_00321at 357.734 kb on + strand, within ECD_00321at 357.734 kb on + strand, within ECD_00321at 357.734 kb on + strand, within ECD_00321at 357.735 kb on - strand, within ECD_00321at 357.735 kb on - strand, within ECD_00321at 357.735 kb on - strand, within ECD_00321at 357.735 kb on - strand, within ECD_00321at 357.738 kb on - strand, within ECD_00321at 357.738 kb on - strand, within ECD_00321at 357.755 kb on + strand, within ECD_00321at 357.826 kb on + strand, within ECD_00321at 357.826 kb on + strand, within ECD_00321at 357.826 kb on + strand, within ECD_00321at 357.837 kb on + strand, within ECD_00321at 357.846 kb on + strand, within ECD_00321at 357.923 kb on + strand, within ECD_00321at 357.923 kb on + strand, within ECD_00321at 357.953 kb on - strand, within ECD_00321at 358.021 kb on + strand, within ECD_00321at 358.025 kb on + strand, within ECD_00321at 358.084 kb on + strand, within ECD_00321at 358.085 kb on - strand, within ECD_00321at 358.090 kb on + strand, within ECD_00321at 358.276 kb on + strand, within ECD_00321at 358.287 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.319 kb on - strand, within ECD_00321at 358.319 kb on - strand, within ECD_00321at 358.469 kb on - strand, within ECD_00321at 358.474 kb on + strand, within ECD_00321at 358.475 kb on - strand, within ECD_00321at 358.475 kb on - strand, within ECD_00321at 358.516 kb on - strand, within ECD_00321at 358.525 kb on + strand, within ECD_00321at 358.525 kb on + strand, within ECD_00321at 358.526 kb on - strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.574 kb on - strand, within ECD_00321at 358.574 kb on - strand, within ECD_00321at 358.627 kb on + strand, within ECD_00321at 358.628 kb on - strand, within ECD_00321at 358.655 kb on - strand, within ECD_00321at 358.705 kb on + strand, within ECD_00321at 358.760 kb on - strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.786 kb on - strandat 358.786 kb on - strandat 358.795 kb on + strandat 358.796 kb on - strandat 358.837 kb on + strandat 358.837 kb on + strandat 358.855 kb on - strandat 358.974 kb on + strandat 358.979 kb on - strandat 358.979 kb on - strandat 359.445 kb on + strand, within ECD_00322at 359.749 kb on + strandat 359.750 kb on - strandat 359.753 kb on - strandat 359.792 kb on - strandat 359.878 kb on - strand, within ECD_00323at 359.902 kb on - strand, within ECD_00323at 359.903 kb on + strand, within ECD_00323at 359.903 kb on + strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.972 kb on + strand, within ECD_00323at 359.973 kb on - strand, within ECD_00323at 359.973 kb on - strand, within ECD_00323at 359.984 kb on - strand, within ECD_00323at 359.984 kb on - strand, within ECD_00323

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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355,653 - -0.6
355,746 - -0.1
356,110 + -0.0
356,312 + -0.4
356,625 + ECD_00321 0.17 +0.2
356,910 + ECD_00321 0.27 -0.3
356,910 + ECD_00321 0.27 -0.6
356,910 + ECD_00321 0.27 +0.5
356,910 + ECD_00321 0.27 -0.0
356,959 + ECD_00321 0.28 +0.0
356,991 + ECD_00321 0.29 +0.4
357,029 + ECD_00321 0.31 +1.0
357,180 - ECD_00321 0.36 +0.9
357,226 + ECD_00321 0.37 +0.9
357,253 + ECD_00321 0.38 -1.0
357,254 - ECD_00321 0.38 +0.2
357,292 + ECD_00321 0.40 +0.5
357,387 + ECD_00321 0.43 +0.6
357,409 - ECD_00321 0.44 +0.6
357,423 + ECD_00321 0.44 +0.5
357,453 + ECD_00321 0.45 +0.2
357,468 + ECD_00321 0.46 -0.5
357,517 + ECD_00321 0.47 +0.1
357,576 + ECD_00321 0.50 +1.9
357,595 + ECD_00321 0.50 +0.2
357,596 - ECD_00321 0.50 +0.1
357,616 - ECD_00321 0.51 -1.0
357,627 + ECD_00321 0.51 +0.0
357,639 - ECD_00321 0.52 -0.6
357,734 + ECD_00321 0.55 +0.9
357,734 + ECD_00321 0.55 -0.8
357,734 + ECD_00321 0.55 -0.8
357,734 + ECD_00321 0.55 -0.1
357,734 + ECD_00321 0.55 -0.2
357,735 - ECD_00321 0.55 +0.3
357,735 - ECD_00321 0.55 +0.5
357,735 - ECD_00321 0.55 -0.0
357,735 - ECD_00321 0.55 -0.1
357,738 - ECD_00321 0.55 +0.3
357,738 - ECD_00321 0.55 +0.0
357,755 + ECD_00321 0.56 -0.8
357,826 + ECD_00321 0.58 +0.1
357,826 + ECD_00321 0.58 -0.9
357,826 + ECD_00321 0.58 -0.0
357,837 + ECD_00321 0.58 +0.1
357,846 + ECD_00321 0.59 -0.3
357,923 + ECD_00321 0.61 +0.6
357,923 + ECD_00321 0.61 +0.6
357,953 - ECD_00321 0.62 +0.4
358,021 + ECD_00321 0.65 +0.7
358,025 + ECD_00321 0.65 -0.7
358,084 + ECD_00321 0.67 +0.7
358,085 - ECD_00321 0.67 -0.7
358,090 + ECD_00321 0.67 +0.3
358,276 + ECD_00321 0.74 +0.5
358,287 + ECD_00321 0.74 +1.1
358,318 + ECD_00321 0.75 +1.2
358,318 + ECD_00321 0.75 -0.5
358,318 + ECD_00321 0.75 +0.3
358,319 - ECD_00321 0.75 +1.4
358,319 - ECD_00321 0.75 +0.0
358,469 - ECD_00321 0.80 -0.6
358,474 + ECD_00321 0.80 +0.8
358,475 - ECD_00321 0.80 +0.3
358,475 - ECD_00321 0.80 +0.7
358,516 - ECD_00321 0.82 -0.8
358,525 + ECD_00321 0.82 +0.3
358,525 + ECD_00321 0.82 +2.6
358,526 - ECD_00321 0.82 -0.2
358,573 + ECD_00321 0.84 -0.5
358,573 + ECD_00321 0.84 -0.6
358,573 + ECD_00321 0.84 +0.2
358,573 + ECD_00321 0.84 -0.2
358,573 + ECD_00321 0.84 +0.5
358,574 - ECD_00321 0.84 +0.7
358,574 - ECD_00321 0.84 -1.0
358,627 + ECD_00321 0.86 +1.7
358,628 - ECD_00321 0.86 +0.9
358,655 - ECD_00321 0.87 +0.0
358,705 + ECD_00321 0.88 +0.5
358,760 - +0.3
358,785 + +0.4
358,785 + +0.4
358,785 + +1.3
358,785 + +0.2
358,786 - +0.1
358,786 - +0.2
358,795 + -0.6
358,796 - -0.1
358,837 + -1.1
358,837 + -0.5
358,855 - -0.5
358,974 + +1.0
358,979 - -0.3
358,979 - -0.0
359,445 + ECD_00322 0.50 +0.8
359,749 + +0.0
359,750 - +0.8
359,753 - +0.2
359,792 - -0.6
359,878 - ECD_00323 0.11 +0.4
359,902 - ECD_00323 0.13 -0.0
359,903 + ECD_00323 0.13 -0.6
359,903 + ECD_00323 0.13 +0.7
359,904 - ECD_00323 0.13 -0.5
359,904 - ECD_00323 0.13 -0.7
359,904 - ECD_00323 0.13 -0.5
359,904 - ECD_00323 0.13 -0.6
359,971 - ECD_00323 0.19 +0.5
359,971 - ECD_00323 0.19 +1.0
359,971 - ECD_00323 0.19 +1.0
359,972 + ECD_00323 0.19 +0.8
359,973 - ECD_00323 0.19 +0.9
359,973 - ECD_00323 0.19 +0.0
359,984 - ECD_00323 0.20 +0.8
359,984 - ECD_00323 0.20 -0.5

Or see this region's nucleotide sequence