Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00276 and ECD_00277 overlap by 1 nucleotides ECD_00277 and ECD_00278 are separated by 421 nucleotides
ECD_00276: ECD_00276 - putative NAD(P)-binding succinyl-CoA synthase, at 306,406 to 307,953
_00276
ECD_00277: ECD_00277 - DUF1116 family protein, at 307,953 to 309,371
_00277
ECD_00278: ECD_00278 - carbamate kinase-like protein, at 309,793 to 310,743
_00278
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -1
0
1 at 306.984 kb on + strand, within ECD_00276 at 307.167 kb on + strand, within ECD_00276 at 307.168 kb on - strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.429 kb on + strand, within ECD_00276 at 307.430 kb on - strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.433 kb on + strand, within ECD_00276 at 307.549 kb on - strand, within ECD_00276 at 307.811 kb on - strand at 307.844 kb on + strand at 307.844 kb on + strand at 307.988 kb on + strand at 307.988 kb on + strand at 307.989 kb on - strand at 308.039 kb on - strand at 308.039 kb on - strand at 308.451 kb on - strand, within ECD_00277 at 308.490 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.492 kb on + strand, within ECD_00277 at 308.493 kb on - strand, within ECD_00277 at 308.638 kb on + strand, within ECD_00277 at 308.796 kb on + strand, within ECD_00277 at 308.797 kb on - strand, within ECD_00277 at 308.862 kb on + strand, within ECD_00277 at 308.985 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.987 kb on + strand, within ECD_00277 at 308.988 kb on - strand, within ECD_00277 at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.374 kb on + strand at 309.447 kb on - strand at 309.695 kb on + strand at 309.786 kb on + strand at 309.844 kb on - strand at 310.044 kb on + strand, within ECD_00278 at 310.087 kb on - strand, within ECD_00278 at 310.309 kb on - strand, within ECD_00278 at 310.358 kb on + strand, within ECD_00278
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 306,984 + ECD_00276 0.37 -1.0 307,167 + ECD_00276 0.49 -0.5 307,168 - ECD_00276 0.49 -0.3 307,429 + ECD_00276 0.66 +1.1 307,429 + ECD_00276 0.66 -0.3 307,430 - ECD_00276 0.66 -0.7 307,433 + ECD_00276 0.66 +0.5 307,433 + ECD_00276 0.66 +0.4 307,549 - ECD_00276 0.74 +0.5 307,811 - -0.2 307,844 + -0.3 307,844 + +0.2 307,988 + -0.2 307,988 + +0.8 307,989 - +0.2 308,039 - -0.1 308,039 - +0.1 308,451 - ECD_00277 0.35 -1.0 308,490 + ECD_00277 0.38 -0.7 308,492 + ECD_00277 0.38 -0.2 308,492 + ECD_00277 0.38 -0.0 308,492 + ECD_00277 0.38 -0.7 308,492 + ECD_00277 0.38 +0.6 308,493 - ECD_00277 0.38 +0.3 308,638 + ECD_00277 0.48 +0.6 308,796 + ECD_00277 0.59 -0.9 308,797 - ECD_00277 0.59 -1.2 308,862 + ECD_00277 0.64 -0.8 308,985 + ECD_00277 0.73 +0.2 308,987 + ECD_00277 0.73 +0.5 308,987 + ECD_00277 0.73 +0.2 308,987 + ECD_00277 0.73 -0.0 308,987 + ECD_00277 0.73 -0.1 308,988 - ECD_00277 0.73 +0.1 309,374 + +0.1 309,374 + -0.7 309,374 + -0.2 309,374 + +0.4 309,374 + -0.3 309,374 + -0.5 309,447 - -0.8 309,695 + -1.1 309,786 + +0.3 309,844 - +0.2 310,044 + ECD_00278 0.26 -0.3 310,087 - ECD_00278 0.31 +0.2 310,309 - ECD_00278 0.54 -0.3 310,358 + ECD_00278 0.59 +0.4
Or see this region's nucleotide sequence