Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00154 and ECD_00155 are separated by 81 nucleotides ECD_00155 and ECD_00156 are separated by 46 nucleotides ECD_00156 and ECD_00157 are separated by 37 nucleotides ECD_00157 and ECD_00158 overlap by 8 nucleotides
ECD_00154: ECD_00154 - H(+)/Cl(-) exchange transporter, at 177,950 to 179,371
_00154
ECD_00155: ECD_00155 - iron-sulfur cluster insertion protein, at 179,453 to 179,797
_00155
ECD_00156: ECD_00156 - UPF0126 family inner membrane protein, at 179,844 to 180,467
_00156
ECD_00157: ECD_00157 - vitamin B12 ABC transporter periplasmic binding protein, at 180,505 to 181,305
_00157
ECD_00158: ECD_00158 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 181,298 to 181,996
_00158
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.983 kb on + strand, within ECD_00154 at 178.984 kb on - strand, within ECD_00154 at 179.120 kb on - strand, within ECD_00154 at 179.152 kb on + strand, within ECD_00154 at 179.153 kb on - strand, within ECD_00154 at 179.204 kb on + strand, within ECD_00154 at 179.205 kb on - strand, within ECD_00154 at 179.227 kb on + strand, within ECD_00154 at 179.228 kb on - strand, within ECD_00154 at 179.250 kb on + strand at 179.251 kb on - strand at 179.251 kb on - strand at 179.390 kb on - strand at 179.393 kb on + strand at 179.452 kb on + strand at 179.788 kb on + strand at 179.789 kb on - strand at 179.791 kb on + strand at 179.791 kb on + strand at 179.882 kb on + strand at 179.882 kb on + strand at 179.883 kb on - strand at 179.883 kb on - strand at 179.974 kb on + strand, within ECD_00156 at 180.006 kb on - strand, within ECD_00156 at 180.092 kb on + strand, within ECD_00156 at 180.104 kb on + strand, within ECD_00156 at 180.137 kb on + strand, within ECD_00156 at 180.301 kb on - strand, within ECD_00156 at 180.345 kb on + strand, within ECD_00156 at 180.445 kb on - strand at 180.511 kb on + strand at 180.512 kb on - strand at 180.512 kb on - strand at 180.529 kb on - strand at 180.552 kb on + strand at 180.555 kb on + strand at 180.556 kb on - strand at 180.556 kb on - strand at 180.692 kb on - strand, within ECD_00157 at 180.857 kb on + strand, within ECD_00157 at 180.950 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.042 kb on - strand, within ECD_00157 at 181.299 kb on + strand at 181.299 kb on + strand at 181.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 178,983 + ECD_00154 0.73 -0.2 178,983 + ECD_00154 0.73 -0.1 178,983 + ECD_00154 0.73 +0.7 178,984 - ECD_00154 0.73 +0.4 179,120 - ECD_00154 0.82 +0.3 179,152 + ECD_00154 0.85 -0.4 179,153 - ECD_00154 0.85 -0.4 179,204 + ECD_00154 0.88 +0.1 179,205 - ECD_00154 0.88 +0.4 179,227 + ECD_00154 0.90 +0.3 179,228 - ECD_00154 0.90 +0.2 179,250 + +0.1 179,251 - +0.1 179,251 - +0.5 179,390 - +1.0 179,393 + +0.0 179,452 + -0.2 179,788 + -0.4 179,789 - -2.5 179,791 + +0.2 179,791 + -0.0 179,882 + +1.3 179,882 + -0.8 179,883 - +0.1 179,883 - +1.3 179,974 + ECD_00156 0.21 +0.3 180,006 - ECD_00156 0.26 -0.1 180,092 + ECD_00156 0.40 -0.5 180,104 + ECD_00156 0.42 +0.1 180,137 + ECD_00156 0.47 +0.6 180,301 - ECD_00156 0.73 +0.1 180,345 + ECD_00156 0.80 -0.2 180,445 - +0.3 180,511 + -0.2 180,512 - -1.0 180,512 - -0.5 180,529 - -0.2 180,552 + +0.0 180,555 + +0.1 180,556 - +0.7 180,556 - -0.1 180,692 - ECD_00157 0.23 -0.3 180,857 + ECD_00157 0.44 -0.3 180,950 - ECD_00157 0.56 -0.4 181,042 - ECD_00157 0.67 -0.4 181,042 - ECD_00157 0.67 -0.1 181,299 + +0.0 181,299 + +0.2 181,300 - -0.4
Or see this region's nucleotide sequence