Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00015 and ECD_00016 are separated by 146 nucleotides ECD_00016 and ECD_00017 are separated by 193 nucleotides ECD_00017 and ECD_00018 are separated by 529 nucleotides
ECD_00015: ECD_00015 - chaperone Hsp40, DnaK co-chaperone, at 14,166 to 15,296
_00015
ECD_00016: ECD_00016 - IS186 hypothetical protein, at 15,443 to 16,555
_00016
ECD_00017: ECD_00017 - regulatory protein for HokC, at 16,749 to 16,958
_00017
ECD_00018: ECD_00018 - sodium-proton antiporter, at 17,488 to 18,654
_00018
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-1
0
1 at 14.520 kb on + strand, within ECD_00015 at 14.956 kb on - strand, within ECD_00015 at 15.337 kb on + strand at 15.354 kb on - strand at 16.762 kb on + strand at 16.857 kb on - strand, within ECD_00017 at 16.857 kb on - strand, within ECD_00017 at 16.890 kb on - strand, within ECD_00017 at 16.890 kb on - strand, within ECD_00017 at 16.890 kb on - strand, within ECD_00017 at 16.922 kb on + strand, within ECD_00017 at 16.923 kb on - strand, within ECD_00017 at 16.932 kb on - strand, within ECD_00017 at 16.943 kb on + strand at 16.944 kb on - strand at 16.944 kb on - strand at 16.944 kb on - strand at 16.944 kb on - strand at 16.958 kb on + strand at 16.958 kb on + strand at 16.959 kb on - strand at 16.960 kb on + strand at 16.978 kb on + strand at 17.063 kb on - strand at 17.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 14,520 + ECD_00015 0.31 -1.7 14,956 - ECD_00015 0.70 -0.7 15,337 + -0.3 15,354 - +1.1 16,762 + -0.1 16,857 - ECD_00017 0.51 -0.2 16,857 - ECD_00017 0.51 -0.7 16,890 - ECD_00017 0.67 +1.0 16,890 - ECD_00017 0.67 -0.4 16,890 - ECD_00017 0.67 -0.4 16,922 + ECD_00017 0.82 +0.4 16,923 - ECD_00017 0.83 -0.6 16,932 - ECD_00017 0.87 +0.1 16,943 + +0.0 16,944 - +1.0 16,944 - -0.2 16,944 - -0.3 16,944 - +0.5 16,958 + +0.5 16,958 + -0.4 16,959 - +0.6 16,960 + -0.1 16,978 + +0.2 17,063 - -0.0 17,414 - -0.5
Or see this region's nucleotide sequence