Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00014 and ECD_00015 are separated by 88 nucleotides ECD_00015 and ECD_00016 are separated by 146 nucleotides
ECD_00014: ECD_00014 - chaperone Hsp70, with co-chaperone DnaJ, at 12,161 to 14,077
_00014
ECD_00015: ECD_00015 - chaperone Hsp40, DnaK co-chaperone, at 14,166 to 15,296
_00015
ECD_00016: ECD_00016 - IS186 hypothetical protein, at 15,443 to 16,555
_00016
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.246 kb on + strand, within ECD_00014 at 13.272 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.758 kb on + strand, within ECD_00014 at 14.084 kb on + strand at 14.084 kb on + strand at 14.086 kb on + strand at 14.086 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.100 kb on + strand at 14.100 kb on + strand at 14.171 kb on + strand at 14.184 kb on + strand at 14.259 kb on + strand at 14.306 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.361 kb on + strand, within ECD_00015 at 14.362 kb on - strand, within ECD_00015 at 14.370 kb on + strand, within ECD_00015 at 14.399 kb on + strand, within ECD_00015 at 14.520 kb on + strand, within ECD_00015 at 14.956 kb on - strand, within ECD_00015 at 15.337 kb on + strand at 15.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 13,246 + ECD_00014 0.57 -1.8 13,272 + ECD_00014 0.58 -1.7 13,326 + ECD_00014 0.61 +0.8 13,326 + ECD_00014 0.61 -0.2 13,758 + ECD_00014 0.83 -0.4 14,084 + +0.6 14,084 + -0.4 14,086 + +0.1 14,086 + -0.0 14,098 + +0.5 14,098 + -0.0 14,098 + +0.0 14,098 + -0.3 14,098 + +0.1 14,100 + -0.2 14,100 + +0.2 14,171 + -0.8 14,184 + -1.0 14,259 + -0.3 14,306 + ECD_00015 0.12 -0.8 14,325 + ECD_00015 0.14 -0.7 14,325 + ECD_00015 0.14 -0.2 14,325 + ECD_00015 0.14 -1.5 14,361 + ECD_00015 0.17 -0.1 14,362 - ECD_00015 0.17 +0.0 14,370 + ECD_00015 0.18 +0.1 14,399 + ECD_00015 0.21 -1.3 14,520 + ECD_00015 0.31 -1.7 14,956 - ECD_00015 0.70 -0.7 15,337 + -0.3 15,354 - +1.1
Or see this region's nucleotide sequence