Strain Fitness in Escherichia coli BL21 around ECD_00002

Experiment: Mixed culture, Halobacteriovorax-10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture, Halobacteriovorax-10
29	+				-0.4
29	+				+0.5
117	+				-1.5
118	-				-2.4
125	+				-1.0
126	-				-0.6
143	+				+0.2
143	+				+0.3
143	+				-0.2
143	+				-0.1
143	+				+0.1
178	+				-1.5
178	+				-0.2
179	-				-2.4
201	+		ECD_00001	0.17	+0.2
202	-		ECD_00001	0.18	-0.7
240	+		ECD_00001	0.76	+0.3
328	+				-2.3
329	-				-2.6
329	-				-2.2
659	+		ECD_00002	0.13	-1.2
659	+		ECD_00002	0.13	-1.9
735	-		ECD_00002	0.16	-2.2
745	+		ECD_00002	0.17	-1.8
746	-		ECD_00002	0.17	-1.7
748	+		ECD_00002	0.17	-0.6
749	-		ECD_00002	0.17	+1.7
813	+		ECD_00002	0.19	-1.2
988	+		ECD_00002	0.26	-2.3
989	-		ECD_00002	0.27	-0.9
1,032	+		ECD_00002	0.28	-3.9
1,032	+		ECD_00002	0.28	-1.5
1,032	+		ECD_00002	0.28	-1.5
1,035	-		ECD_00002	0.28	-1.9
1,274	+		ECD_00002	0.38	-1.2
1,274	+		ECD_00002	0.38	-1.1
1,275	-		ECD_00002	0.38	-0.9
1,275	-		ECD_00002	0.38	-2.3
1,277	+		ECD_00002	0.38	-2.5
1,401	+		ECD_00002	0.43	-2.1
1,402	-		ECD_00002	0.43	-1.7
1,471	-		ECD_00002	0.46	-1.1
1,492	+		ECD_00002	0.47	-0.8
1,493	-		ECD_00002	0.47	-1.0
1,529	+		ECD_00002	0.48	-1.8
1,540	+		ECD_00002	0.49	-1.4
1,540	+		ECD_00002	0.49	-2.2
1,540	+		ECD_00002	0.49	-1.9
1,541	-		ECD_00002	0.49	-1.3
1,541	-		ECD_00002	0.49	-3.2
1,550	+		ECD_00002	0.49	-0.6
1,551	-		ECD_00002	0.49	-1.2
1,551	-		ECD_00002	0.49	-0.4
1,551	-		ECD_00002	0.49	-3.1
1,698	-		ECD_00002	0.55	-1.9
1,814	+		ECD_00002	0.60	-2.3
1,814	+		ECD_00002	0.60	-1.6
1,821	-		ECD_00002	0.60	-1.6
1,828	+		ECD_00002	0.61	-0.4
1,828	+		ECD_00002	0.61	-0.8
1,828	+		ECD_00002	0.61	-2.2
1,829	-		ECD_00002	0.61	-1.3
1,829	-		ECD_00002	0.61	-1.8
1,883	-		ECD_00002	0.63	-1.5
2,026	-		ECD_00002	0.69	-1.5
2,097	+		ECD_00002	0.71	-0.7
2,098	-		ECD_00002	0.72	-1.2
2,100	+		ECD_00002	0.72	-2.0
2,100	+		ECD_00002	0.72	-2.0
2,101	-		ECD_00002	0.72	-0.9
2,101	-		ECD_00002	0.72	-1.4
2,138	+		ECD_00002	0.73	-2.0
2,138	+		ECD_00002	0.73	-1.0
2,139	-		ECD_00002	0.73	-1.7
2,148	+		ECD_00002	0.74	-2.3
2,149	-		ECD_00002	0.74	-2.2
2,259	+		ECD_00002	0.78	-1.8
2,260	-		ECD_00002	0.78	-1.8
2,328	+		ECD_00002	0.81	-1.5
2,330	+		ECD_00002	0.81	-2.2
2,379	-		ECD_00002	0.83	-3.6
2,568	+				-2.7
2,569	-				-2.3
2,569	-				-1.4
2,676	+				-1.4
2,678	+				-1.5
2,679	-				-1.2
2,685	+				-2.5
2,685	+				-1.2
2,685	+				-2.1
2,686	-				-1.5
2,767	+				-1.0
2,767	+				-1.1
2,768	-				-1.8
2,768	-				-1.2
2,771	+				-1.5
2,788	+				-0.1
2,789	-				-2.4
2,805	+				-0.6
2,903	+		ECD_00003	0.11	-1.9
2,903	+		ECD_00003	0.11	-1.0
2,903	+		ECD_00003	0.11	-1.9
2,904	-		ECD_00003	0.11	-1.8
3,154	-		ECD_00003	0.38	-1.7
3,218	-		ECD_00003	0.45	-1.0
3,249	+		ECD_00003	0.48	-1.6
3,250	-		ECD_00003	0.48	-1.7
3,339	+		ECD_00003	0.58	-1.8
3,443	-		ECD_00003	0.69	-1.4
3,443	-		ECD_00003	0.69	-1.3
3,651	+				-0.9
3,659	-				-1.9
3,659	-				-2.6
3,659	-				-1.1
3,659	-				-1.8
3,687	+				-3.2
3,687	+				-1.6
3,688	-				-2.6
3,719	+				-0.1
3,730	+				-0.2
3,743	-				-2.2
3,743	-				-1.2