Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2415

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2413 and B158DRAFT_2414 are separated by 9 nucleotidesB158DRAFT_2414 and B158DRAFT_2415 are separated by 14 nucleotidesB158DRAFT_2415 and B158DRAFT_2416 overlap by 1 nucleotidesB158DRAFT_2416 and B158DRAFT_2417 are separated by 2 nucleotides B158DRAFT_2413: B158DRAFT_2413 - prepilin-type N-terminal cleavage/methylation domain, at 584,578 to 585,306 _2413 B158DRAFT_2414: B158DRAFT_2414 - hypothetical protein, at 585,316 to 585,879 _2414 B158DRAFT_2415: B158DRAFT_2415 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 585,894 to 588,968 _2415 B158DRAFT_2416: B158DRAFT_2416 - prepilin-type N-terminal cleavage/methylation domain, at 588,968 to 589,417 _2416 B158DRAFT_2417: B158DRAFT_2417 - prepilin-type N-terminal cleavage/methylation domain, at 589,420 to 589,827 _2417 Position (kb) 585 586 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1at 584.921 kb on - strand, within B158DRAFT_2413at 584.978 kb on - strand, within B158DRAFT_2413at 585.014 kb on + strand, within B158DRAFT_2413at 585.014 kb on + strand, within B158DRAFT_2413at 585.057 kb on + strand, within B158DRAFT_2413at 585.058 kb on + strand, within B158DRAFT_2413at 585.058 kb on - strand, within B158DRAFT_2413at 585.127 kb on + strand, within B158DRAFT_2413at 585.187 kb on + strand, within B158DRAFT_2413at 585.195 kb on - strand, within B158DRAFT_2413at 585.497 kb on - strand, within B158DRAFT_2414at 585.497 kb on - strand, within B158DRAFT_2414at 585.667 kb on + strand, within B158DRAFT_2414at 585.826 kb on + strandat 585.956 kb on - strandat 586.029 kb on + strandat 586.056 kb on - strandat 586.139 kb on + strandat 586.139 kb on + strandat 586.147 kb on - strandat 586.211 kb on - strand, within B158DRAFT_2415at 586.211 kb on - strand, within B158DRAFT_2415at 586.240 kb on + strand, within B158DRAFT_2415at 586.241 kb on - strand, within B158DRAFT_2415at 586.266 kb on + strand, within B158DRAFT_2415at 586.313 kb on + strand, within B158DRAFT_2415at 586.357 kb on + strand, within B158DRAFT_2415at 586.421 kb on + strand, within B158DRAFT_2415at 586.525 kb on - strand, within B158DRAFT_2415at 586.527 kb on + strand, within B158DRAFT_2415at 586.619 kb on + strand, within B158DRAFT_2415at 586.637 kb on - strand, within B158DRAFT_2415at 586.774 kb on - strand, within B158DRAFT_2415at 586.801 kb on + strand, within B158DRAFT_2415at 586.809 kb on - strand, within B158DRAFT_2415at 586.809 kb on - strand, within B158DRAFT_2415at 586.820 kb on + strand, within B158DRAFT_2415at 587.035 kb on - strand, within B158DRAFT_2415at 587.035 kb on - strand, within B158DRAFT_2415at 587.067 kb on + strand, within B158DRAFT_2415at 587.073 kb on + strand, within B158DRAFT_2415at 587.075 kb on - strand, within B158DRAFT_2415at 587.081 kb on - strand, within B158DRAFT_2415at 587.108 kb on - strand, within B158DRAFT_2415at 587.160 kb on + strand, within B158DRAFT_2415at 587.168 kb on - strand, within B158DRAFT_2415at 587.170 kb on + strand, within B158DRAFT_2415at 587.250 kb on - strand, within B158DRAFT_2415at 587.258 kb on + strand, within B158DRAFT_2415at 587.277 kb on + strand, within B158DRAFT_2415at 587.278 kb on - strand, within B158DRAFT_2415at 587.282 kb on + strand, within B158DRAFT_2415at 587.285 kb on - strand, within B158DRAFT_2415at 587.301 kb on + strand, within B158DRAFT_2415at 587.344 kb on + strand, within B158DRAFT_2415at 587.387 kb on - strand, within B158DRAFT_2415at 587.446 kb on + strand, within B158DRAFT_2415at 587.583 kb on + strand, within B158DRAFT_2415at 587.583 kb on + strand, within B158DRAFT_2415at 587.608 kb on + strand, within B158DRAFT_2415at 587.623 kb on - strand, within B158DRAFT_2415at 587.634 kb on + strand, within B158DRAFT_2415at 587.648 kb on - strand, within B158DRAFT_2415at 587.666 kb on - strand, within B158DRAFT_2415at 587.666 kb on - strand, within B158DRAFT_2415at 587.750 kb on - strand, within B158DRAFT_2415at 587.865 kb on + strand, within B158DRAFT_2415at 587.873 kb on + strand, within B158DRAFT_2415at 587.883 kb on + strand, within B158DRAFT_2415at 587.883 kb on + strand, within B158DRAFT_2415at 587.891 kb on - strand, within B158DRAFT_2415at 588.022 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.214 kb on - strand, within B158DRAFT_2415at 588.293 kb on - strand, within B158DRAFT_2415at 588.328 kb on + strand, within B158DRAFT_2415at 588.458 kb on - strand, within B158DRAFT_2415at 588.463 kb on - strand, within B158DRAFT_2415at 588.586 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.622 kb on - strand, within B158DRAFT_2415at 588.691 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.702 kb on - strandat 588.702 kb on - strandat 588.709 kb on - strandat 588.709 kb on - strandat 588.709 kb on - strandat 588.719 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.735 kb on - strandat 588.735 kb on - strandat 588.735 kb on - strandat 588.795 kb on + strandat 588.795 kb on + strandat 588.795 kb on + strandat 588.841 kb on + strandat 588.926 kb on + strandat 588.934 kb on - strandat 589.247 kb on - strand, within B158DRAFT_2416at 589.329 kb on + strand, within B158DRAFT_2416at 589.337 kb on - strand, within B158DRAFT_2416at 589.547 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on - strand, within B158DRAFT_2417at 589.604 kb on - strand, within B158DRAFT_2417at 589.688 kb on - strand, within B158DRAFT_2417at 589.688 kb on - strand, within B158DRAFT_2417at 589.805 kb on - strandat 589.850 kb on + strandat 589.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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584,921 - B158DRAFT_2413 0.47 -1.7
584,978 - B158DRAFT_2413 0.55 -1.5
585,014 + B158DRAFT_2413 0.60 -2.6
585,014 + B158DRAFT_2413 0.60 -0.4
585,057 + B158DRAFT_2413 0.66 -1.0
585,058 + B158DRAFT_2413 0.66 +0.0
585,058 - B158DRAFT_2413 0.66 -0.9
585,127 + B158DRAFT_2413 0.75 -1.1
585,187 + B158DRAFT_2413 0.84 -0.7
585,195 - B158DRAFT_2413 0.85 -0.5
585,497 - B158DRAFT_2414 0.32 -1.4
585,497 - B158DRAFT_2414 0.32 -2.0
585,667 + B158DRAFT_2414 0.62 -0.8
585,826 + -1.9
585,956 - -0.1
586,029 + -0.4
586,056 - -1.1
586,139 + +0.0
586,139 + -1.1
586,147 - -0.5
586,211 - B158DRAFT_2415 0.10 -0.1
586,211 - B158DRAFT_2415 0.10 -1.2
586,240 + B158DRAFT_2415 0.11 -0.7
586,241 - B158DRAFT_2415 0.11 -1.0
586,266 + B158DRAFT_2415 0.12 +1.3
586,313 + B158DRAFT_2415 0.14 -1.0
586,357 + B158DRAFT_2415 0.15 -0.5
586,421 + B158DRAFT_2415 0.17 -0.1
586,525 - B158DRAFT_2415 0.21 -0.3
586,527 + B158DRAFT_2415 0.21 -0.1
586,619 + B158DRAFT_2415 0.24 -0.4
586,637 - B158DRAFT_2415 0.24 -0.6
586,774 - B158DRAFT_2415 0.29 -0.6
586,801 + B158DRAFT_2415 0.29 -0.8
586,809 - B158DRAFT_2415 0.30 -0.7
586,809 - B158DRAFT_2415 0.30 -0.7
586,820 + B158DRAFT_2415 0.30 -0.9
587,035 - B158DRAFT_2415 0.37 +0.0
587,035 - B158DRAFT_2415 0.37 -1.3
587,067 + B158DRAFT_2415 0.38 +0.3
587,073 + B158DRAFT_2415 0.38 -1.0
587,075 - B158DRAFT_2415 0.38 -2.2
587,081 - B158DRAFT_2415 0.39 -0.5
587,108 - B158DRAFT_2415 0.39 -0.3
587,160 + B158DRAFT_2415 0.41 -2.3
587,168 - B158DRAFT_2415 0.41 -0.3
587,170 + B158DRAFT_2415 0.41 -1.3
587,250 - B158DRAFT_2415 0.44 -1.4
587,258 + B158DRAFT_2415 0.44 -0.7
587,277 + B158DRAFT_2415 0.45 -3.1
587,278 - B158DRAFT_2415 0.45 -1.2
587,282 + B158DRAFT_2415 0.45 -0.6
587,285 - B158DRAFT_2415 0.45 -0.1
587,301 + B158DRAFT_2415 0.46 -0.1
587,344 + B158DRAFT_2415 0.47 -1.1
587,387 - B158DRAFT_2415 0.49 -0.1
587,446 + B158DRAFT_2415 0.50 -0.2
587,583 + B158DRAFT_2415 0.55 -0.2
587,583 + B158DRAFT_2415 0.55 +0.3
587,608 + B158DRAFT_2415 0.56 -1.4
587,623 - B158DRAFT_2415 0.56 -0.5
587,634 + B158DRAFT_2415 0.57 -1.1
587,648 - B158DRAFT_2415 0.57 -0.7
587,666 - B158DRAFT_2415 0.58 -1.3
587,666 - B158DRAFT_2415 0.58 -0.7
587,750 - B158DRAFT_2415 0.60 -0.2
587,865 + B158DRAFT_2415 0.64 -1.1
587,873 + B158DRAFT_2415 0.64 -0.4
587,883 + B158DRAFT_2415 0.65 -1.2
587,883 + B158DRAFT_2415 0.65 -1.1
587,891 - B158DRAFT_2415 0.65 -0.0
588,022 + B158DRAFT_2415 0.69 -2.5
588,078 + B158DRAFT_2415 0.71 -2.2
588,078 + B158DRAFT_2415 0.71 -0.7
588,078 + B158DRAFT_2415 0.71 -0.2
588,078 + B158DRAFT_2415 0.71 -0.3
588,214 - B158DRAFT_2415 0.75 +0.2
588,293 - B158DRAFT_2415 0.78 -0.8
588,328 + B158DRAFT_2415 0.79 -0.4
588,458 - B158DRAFT_2415 0.83 -1.0
588,463 - B158DRAFT_2415 0.84 -2.3
588,586 + B158DRAFT_2415 0.88 -0.7
588,614 + B158DRAFT_2415 0.88 -0.2
588,614 + B158DRAFT_2415 0.88 -0.4
588,614 + B158DRAFT_2415 0.88 -0.5
588,622 - B158DRAFT_2415 0.89 -1.1
588,691 + -1.9
588,701 + -0.8
588,701 + -0.9
588,701 + -0.5
588,701 + -0.4
588,701 + -1.0
588,701 + -2.0
588,702 - -1.2
588,702 - -1.2
588,709 - -0.1
588,709 - -0.6
588,709 - -1.1
588,719 + -0.6
588,727 + +0.0
588,727 + -0.5
588,727 + -0.9
588,727 + -1.2
588,727 + -0.6
588,727 + -1.8
588,727 + -1.8
588,735 - -0.6
588,735 - -1.2
588,735 - -1.7
588,795 + -0.6
588,795 + -0.3
588,795 + -0.7
588,841 + -1.0
588,926 + -1.0
588,934 - -0.4
589,247 - B158DRAFT_2416 0.62 +0.0
589,329 + B158DRAFT_2416 0.80 +0.6
589,337 - B158DRAFT_2416 0.82 -0.7
589,547 + B158DRAFT_2417 0.31 -1.0
589,596 + B158DRAFT_2417 0.43 -0.7
589,596 + B158DRAFT_2417 0.43 -0.3
589,596 + B158DRAFT_2417 0.43 -0.6
589,596 - B158DRAFT_2417 0.43 -0.1
589,604 - B158DRAFT_2417 0.45 +0.6
589,688 - B158DRAFT_2417 0.66 -0.3
589,688 - B158DRAFT_2417 0.66 -0.9
589,805 - -0.5
589,850 + -0.0
589,960 - -0.3

Or see this region's nucleotide sequence