Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2010

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2007 and B158DRAFT_2008 overlap by 4 nucleotidesB158DRAFT_2008 and B158DRAFT_2009 are separated by 15 nucleotidesB158DRAFT_2009 and B158DRAFT_2010 are separated by 130 nucleotidesB158DRAFT_2010 and B158DRAFT_2011 overlap by 16 nucleotidesB158DRAFT_2011 and B158DRAFT_2012 are separated by 363 nucleotides B158DRAFT_2007: B158DRAFT_2007 - hypothetical protein, at 139,553 to 139,975 _2007 B158DRAFT_2008: B158DRAFT_2008 - Uncharacterized protein conserved in bacteria, at 139,972 to 140,370 _2008 B158DRAFT_2009: B158DRAFT_2009 - hypothetical protein, at 140,386 to 140,640 _2009 B158DRAFT_2010: B158DRAFT_2010 - hypothetical protein, at 140,771 to 141,127 _2010 B158DRAFT_2011: B158DRAFT_2011 - hypothetical protein, at 141,112 to 141,459 _2011 B158DRAFT_2012: B158DRAFT_2012 - replicative DNA helicase, at 141,823 to 143,208 _2012 Position (kb) 140 141 142Strain fitness (log2 ratio) -2 -1 0 1at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.827 kb on + strand, within B158DRAFT_2007at 139.835 kb on - strand, within B158DRAFT_2007at 139.835 kb on - strand, within B158DRAFT_2007at 139.884 kb on + strand, within B158DRAFT_2007at 139.884 kb on + strand, within B158DRAFT_2007at 139.892 kb on - strand, within B158DRAFT_2007at 139.898 kb on + strand, within B158DRAFT_2007at 139.912 kb on - strand, within B158DRAFT_2007at 140.007 kb on - strandat 140.014 kb on + strand, within B158DRAFT_2008at 140.020 kb on - strand, within B158DRAFT_2008at 140.044 kb on + strand, within B158DRAFT_2008at 140.052 kb on - strand, within B158DRAFT_2008at 140.103 kb on + strand, within B158DRAFT_2008at 140.111 kb on - strand, within B158DRAFT_2008at 140.239 kb on + strand, within B158DRAFT_2008at 140.246 kb on + strand, within B158DRAFT_2008at 140.254 kb on - strand, within B158DRAFT_2008at 140.296 kb on - strand, within B158DRAFT_2008at 140.321 kb on + strand, within B158DRAFT_2008at 140.321 kb on + strand, within B158DRAFT_2008at 140.324 kb on - strand, within B158DRAFT_2008at 140.329 kb on - strand, within B158DRAFT_2008at 140.349 kb on + strandat 140.370 kb on - strandat 140.389 kb on + strandat 140.389 kb on + strandat 140.397 kb on - strandat 140.397 kb on - strandat 140.397 kb on - strandat 140.415 kb on + strand, within B158DRAFT_2009at 140.468 kb on + strand, within B158DRAFT_2009at 140.470 kb on + strand, within B158DRAFT_2009at 140.471 kb on - strand, within B158DRAFT_2009at 140.578 kb on - strand, within B158DRAFT_2009at 140.592 kb on - strand, within B158DRAFT_2009at 140.655 kb on + strandat 140.663 kb on - strandat 140.676 kb on + strandat 140.779 kb on + strandat 140.800 kb on + strandat 140.800 kb on + strandat 140.800 kb on + strandat 140.800 kb on + strandat 140.800 kb on + strandat 140.808 kb on - strand, within B158DRAFT_2010at 140.808 kb on - strand, within B158DRAFT_2010at 140.897 kb on - strand, within B158DRAFT_2010at 140.897 kb on - strand, within B158DRAFT_2010at 140.901 kb on + strand, within B158DRAFT_2010at 140.923 kb on - strand, within B158DRAFT_2010at 141.081 kb on + strand, within B158DRAFT_2010at 141.154 kb on + strand, within B158DRAFT_2011at 141.156 kb on - strand, within B158DRAFT_2011at 141.213 kb on + strand, within B158DRAFT_2011at 141.226 kb on - strand, within B158DRAFT_2011at 141.263 kb on + strand, within B158DRAFT_2011at 141.271 kb on - strand, within B158DRAFT_2011at 141.309 kb on - strand, within B158DRAFT_2011at 141.343 kb on + strand, within B158DRAFT_2011at 141.370 kb on - strand, within B158DRAFT_2011at 141.489 kb on + strandat 141.545 kb on + strandat 141.553 kb on - strandat 141.611 kb on - strandat 141.629 kb on + strandat 141.704 kb on + strandat 141.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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139,827 + B158DRAFT_2007 0.65 +0.2
139,827 + B158DRAFT_2007 0.65 -0.0
139,827 + B158DRAFT_2007 0.65 +0.6
139,827 + B158DRAFT_2007 0.65 +0.1
139,835 - B158DRAFT_2007 0.67 -0.2
139,835 - B158DRAFT_2007 0.67 -0.7
139,884 + B158DRAFT_2007 0.78 +0.1
139,884 + B158DRAFT_2007 0.78 -0.8
139,892 - B158DRAFT_2007 0.80 +0.5
139,898 + B158DRAFT_2007 0.82 -1.5
139,912 - B158DRAFT_2007 0.85 +0.1
140,007 - -0.2
140,014 + B158DRAFT_2008 0.11 -2.1
140,020 - B158DRAFT_2008 0.12 -0.2
140,044 + B158DRAFT_2008 0.18 -1.6
140,052 - B158DRAFT_2008 0.20 -0.7
140,103 + B158DRAFT_2008 0.33 +0.1
140,111 - B158DRAFT_2008 0.35 -0.6
140,239 + B158DRAFT_2008 0.67 -1.2
140,246 + B158DRAFT_2008 0.69 -0.3
140,254 - B158DRAFT_2008 0.71 -1.8
140,296 - B158DRAFT_2008 0.81 +1.1
140,321 + B158DRAFT_2008 0.87 -1.4
140,321 + B158DRAFT_2008 0.87 +0.6
140,324 - B158DRAFT_2008 0.88 -0.1
140,329 - B158DRAFT_2008 0.89 +0.1
140,349 + +0.0
140,370 - +0.2
140,389 + -1.0
140,389 + -0.4
140,397 - -0.1
140,397 - -1.1
140,397 - -1.5
140,415 + B158DRAFT_2009 0.11 -0.5
140,468 + B158DRAFT_2009 0.32 +0.4
140,470 + B158DRAFT_2009 0.33 +0.7
140,471 - B158DRAFT_2009 0.33 +0.3
140,578 - B158DRAFT_2009 0.75 -0.8
140,592 - B158DRAFT_2009 0.81 +0.3
140,655 + -1.0
140,663 - -0.3
140,676 + -0.8
140,779 + -0.2
140,800 + -0.2
140,800 + +0.9
140,800 + -0.1
140,800 + -0.2
140,800 + -0.0
140,808 - B158DRAFT_2010 0.10 -0.3
140,808 - B158DRAFT_2010 0.10 -0.2
140,897 - B158DRAFT_2010 0.35 -0.8
140,897 - B158DRAFT_2010 0.35 -1.0
140,901 + B158DRAFT_2010 0.36 -0.4
140,923 - B158DRAFT_2010 0.43 -0.4
141,081 + B158DRAFT_2010 0.87 +0.1
141,154 + B158DRAFT_2011 0.12 -0.0
141,156 - B158DRAFT_2011 0.13 -1.6
141,213 + B158DRAFT_2011 0.29 -0.0
141,226 - B158DRAFT_2011 0.33 -1.0
141,263 + B158DRAFT_2011 0.43 +0.4
141,271 - B158DRAFT_2011 0.46 +0.6
141,309 - B158DRAFT_2011 0.57 +0.2
141,343 + B158DRAFT_2011 0.66 -0.6
141,370 - B158DRAFT_2011 0.74 -0.4
141,489 + -0.2
141,545 + +0.7
141,553 - -0.2
141,611 - -1.3
141,629 + -0.4
141,704 + -1.2
141,745 + +0.0

Or see this region's nucleotide sequence