Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2007 and B158DRAFT_2008 overlap by 4 nucleotides B158DRAFT_2008 and B158DRAFT_2009 are separated by 15 nucleotides B158DRAFT_2009 and B158DRAFT_2010 are separated by 130 nucleotides B158DRAFT_2010 and B158DRAFT_2011 overlap by 16 nucleotides B158DRAFT_2011 and B158DRAFT_2012 are separated by 363 nucleotides
B158DRAFT_2007: B158DRAFT_2007 - hypothetical protein, at 139,553 to 139,975
_2007
B158DRAFT_2008: B158DRAFT_2008 - Uncharacterized protein conserved in bacteria, at 139,972 to 140,370
_2008
B158DRAFT_2009: B158DRAFT_2009 - hypothetical protein, at 140,386 to 140,640
_2009
B158DRAFT_2010: B158DRAFT_2010 - hypothetical protein, at 140,771 to 141,127
_2010
B158DRAFT_2011: B158DRAFT_2011 - hypothetical protein, at 141,112 to 141,459
_2011
B158DRAFT_2012: B158DRAFT_2012 - replicative DNA helicase, at 141,823 to 143,208
_2012
Position (kb)
140
141
142 Strain fitness (log2 ratio)
-2
-1
0
1 at 139.827 kb on + strand, within B158DRAFT_2007 at 139.827 kb on + strand, within B158DRAFT_2007 at 139.827 kb on + strand, within B158DRAFT_2007 at 139.827 kb on + strand, within B158DRAFT_2007 at 139.835 kb on - strand, within B158DRAFT_2007 at 139.835 kb on - strand, within B158DRAFT_2007 at 139.884 kb on + strand, within B158DRAFT_2007 at 139.884 kb on + strand, within B158DRAFT_2007 at 139.892 kb on - strand, within B158DRAFT_2007 at 139.898 kb on + strand, within B158DRAFT_2007 at 139.912 kb on - strand, within B158DRAFT_2007 at 140.007 kb on - strand at 140.014 kb on + strand, within B158DRAFT_2008 at 140.020 kb on - strand, within B158DRAFT_2008 at 140.044 kb on + strand, within B158DRAFT_2008 at 140.052 kb on - strand, within B158DRAFT_2008 at 140.103 kb on + strand, within B158DRAFT_2008 at 140.111 kb on - strand, within B158DRAFT_2008 at 140.239 kb on + strand, within B158DRAFT_2008 at 140.246 kb on + strand, within B158DRAFT_2008 at 140.254 kb on - strand, within B158DRAFT_2008 at 140.296 kb on - strand, within B158DRAFT_2008 at 140.321 kb on + strand, within B158DRAFT_2008 at 140.321 kb on + strand, within B158DRAFT_2008 at 140.324 kb on - strand, within B158DRAFT_2008 at 140.329 kb on - strand, within B158DRAFT_2008 at 140.349 kb on + strand at 140.370 kb on - strand at 140.389 kb on + strand at 140.389 kb on + strand at 140.397 kb on - strand at 140.397 kb on - strand at 140.397 kb on - strand at 140.415 kb on + strand, within B158DRAFT_2009 at 140.468 kb on + strand, within B158DRAFT_2009 at 140.470 kb on + strand, within B158DRAFT_2009 at 140.471 kb on - strand, within B158DRAFT_2009 at 140.578 kb on - strand, within B158DRAFT_2009 at 140.592 kb on - strand, within B158DRAFT_2009 at 140.655 kb on + strand at 140.663 kb on - strand at 140.676 kb on + strand at 140.779 kb on + strand at 140.800 kb on + strand at 140.800 kb on + strand at 140.800 kb on + strand at 140.800 kb on + strand at 140.800 kb on + strand at 140.808 kb on - strand, within B158DRAFT_2010 at 140.808 kb on - strand, within B158DRAFT_2010 at 140.897 kb on - strand, within B158DRAFT_2010 at 140.897 kb on - strand, within B158DRAFT_2010 at 140.901 kb on + strand, within B158DRAFT_2010 at 140.923 kb on - strand, within B158DRAFT_2010 at 141.081 kb on + strand, within B158DRAFT_2010 at 141.154 kb on + strand, within B158DRAFT_2011 at 141.156 kb on - strand, within B158DRAFT_2011 at 141.213 kb on + strand, within B158DRAFT_2011 at 141.226 kb on - strand, within B158DRAFT_2011 at 141.263 kb on + strand, within B158DRAFT_2011 at 141.271 kb on - strand, within B158DRAFT_2011 at 141.309 kb on - strand, within B158DRAFT_2011 at 141.343 kb on + strand, within B158DRAFT_2011 at 141.370 kb on - strand, within B158DRAFT_2011 at 141.489 kb on + strand at 141.545 kb on + strand at 141.553 kb on - strand at 141.611 kb on - strand at 141.629 kb on + strand at 141.704 kb on + strand at 141.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 139,827 + B158DRAFT_2007 0.65 +0.2 139,827 + B158DRAFT_2007 0.65 -0.0 139,827 + B158DRAFT_2007 0.65 +0.6 139,827 + B158DRAFT_2007 0.65 +0.1 139,835 - B158DRAFT_2007 0.67 -0.2 139,835 - B158DRAFT_2007 0.67 -0.7 139,884 + B158DRAFT_2007 0.78 +0.1 139,884 + B158DRAFT_2007 0.78 -0.8 139,892 - B158DRAFT_2007 0.80 +0.5 139,898 + B158DRAFT_2007 0.82 -1.5 139,912 - B158DRAFT_2007 0.85 +0.1 140,007 - -0.2 140,014 + B158DRAFT_2008 0.11 -2.1 140,020 - B158DRAFT_2008 0.12 -0.2 140,044 + B158DRAFT_2008 0.18 -1.6 140,052 - B158DRAFT_2008 0.20 -0.7 140,103 + B158DRAFT_2008 0.33 +0.1 140,111 - B158DRAFT_2008 0.35 -0.6 140,239 + B158DRAFT_2008 0.67 -1.2 140,246 + B158DRAFT_2008 0.69 -0.3 140,254 - B158DRAFT_2008 0.71 -1.8 140,296 - B158DRAFT_2008 0.81 +1.1 140,321 + B158DRAFT_2008 0.87 -1.4 140,321 + B158DRAFT_2008 0.87 +0.6 140,324 - B158DRAFT_2008 0.88 -0.1 140,329 - B158DRAFT_2008 0.89 +0.1 140,349 + +0.0 140,370 - +0.2 140,389 + -1.0 140,389 + -0.4 140,397 - -0.1 140,397 - -1.1 140,397 - -1.5 140,415 + B158DRAFT_2009 0.11 -0.5 140,468 + B158DRAFT_2009 0.32 +0.4 140,470 + B158DRAFT_2009 0.33 +0.7 140,471 - B158DRAFT_2009 0.33 +0.3 140,578 - B158DRAFT_2009 0.75 -0.8 140,592 - B158DRAFT_2009 0.81 +0.3 140,655 + -1.0 140,663 - -0.3 140,676 + -0.8 140,779 + -0.2 140,800 + -0.2 140,800 + +0.9 140,800 + -0.1 140,800 + -0.2 140,800 + -0.0 140,808 - B158DRAFT_2010 0.10 -0.3 140,808 - B158DRAFT_2010 0.10 -0.2 140,897 - B158DRAFT_2010 0.35 -0.8 140,897 - B158DRAFT_2010 0.35 -1.0 140,901 + B158DRAFT_2010 0.36 -0.4 140,923 - B158DRAFT_2010 0.43 -0.4 141,081 + B158DRAFT_2010 0.87 +0.1 141,154 + B158DRAFT_2011 0.12 -0.0 141,156 - B158DRAFT_2011 0.13 -1.6 141,213 + B158DRAFT_2011 0.29 -0.0 141,226 - B158DRAFT_2011 0.33 -1.0 141,263 + B158DRAFT_2011 0.43 +0.4 141,271 - B158DRAFT_2011 0.46 +0.6 141,309 - B158DRAFT_2011 0.57 +0.2 141,343 + B158DRAFT_2011 0.66 -0.6 141,370 - B158DRAFT_2011 0.74 -0.4 141,489 + -0.2 141,545 + +0.7 141,553 - -0.2 141,611 - -1.3 141,629 + -0.4 141,704 + -1.2 141,745 + +0.0
Or see this region's nucleotide sequence