Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1786 and B158DRAFT_1787 are separated by 455 nucleotides B158DRAFT_1787 and B158DRAFT_1788 are separated by 122 nucleotides B158DRAFT_1788 and B158DRAFT_1789 are separated by 81 nucleotides
B158DRAFT_1786: B158DRAFT_1786 - Outer membrane receptor proteins, mostly Fe transport, at 1,879,688 to 1,881,883
_1786
B158DRAFT_1787: B158DRAFT_1787 - hypothetical protein, at 1,882,339 to 1,883,112
_1787
B158DRAFT_1788: B158DRAFT_1788 - hypothetical protein, at 1,883,235 to 1,883,741
_1788
B158DRAFT_1789: B158DRAFT_1789 - hypothetical protein, at 1,883,823 to 1,884,341
_1789
Position (kb)
1882
1883
1884 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1881.344 kb on - strand, within B158DRAFT_1786 at 1881.395 kb on - strand, within B158DRAFT_1786 at 1881.411 kb on + strand, within B158DRAFT_1786 at 1881.423 kb on + strand, within B158DRAFT_1786 at 1881.478 kb on + strand, within B158DRAFT_1786 at 1881.587 kb on - strand, within B158DRAFT_1786 at 1881.587 kb on - strand, within B158DRAFT_1786 at 1881.623 kb on + strand, within B158DRAFT_1786 at 1881.666 kb on + strand at 1881.690 kb on + strand at 1881.698 kb on - strand at 1881.719 kb on + strand at 1881.727 kb on - strand at 1881.727 kb on - strand at 1881.747 kb on + strand at 1881.770 kb on - strand at 1881.778 kb on - strand at 1881.883 kb on + strand at 1881.912 kb on + strand at 1881.966 kb on - strand at 1881.968 kb on + strand at 1881.968 kb on + strand at 1881.976 kb on - strand at 1882.042 kb on - strand at 1882.076 kb on + strand at 1882.114 kb on + strand at 1882.149 kb on + strand at 1882.210 kb on - strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.268 kb on + strand at 1882.302 kb on + strand at 1882.302 kb on + strand at 1882.302 kb on + strand at 1882.308 kb on + strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.323 kb on - strand at 1882.331 kb on + strand at 1882.339 kb on + strand at 1882.348 kb on + strand at 1882.357 kb on - strand at 1882.461 kb on - strand, within B158DRAFT_1787 at 1882.627 kb on - strand, within B158DRAFT_1787 at 1882.656 kb on + strand, within B158DRAFT_1787 at 1882.718 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.762 kb on - strand, within B158DRAFT_1787 at 1882.762 kb on - strand, within B158DRAFT_1787 at 1882.793 kb on + strand, within B158DRAFT_1787 at 1882.891 kb on + strand, within B158DRAFT_1787 at 1882.969 kb on + strand, within B158DRAFT_1787 at 1882.969 kb on + strand, within B158DRAFT_1787 at 1882.977 kb on - strand, within B158DRAFT_1787 at 1883.110 kb on - strand at 1883.119 kb on - strand at 1883.155 kb on - strand at 1883.155 kb on - strand at 1883.241 kb on - strand at 1883.276 kb on + strand at 1883.453 kb on - strand, within B158DRAFT_1788 at 1883.615 kb on + strand, within B158DRAFT_1788 at 1883.755 kb on - strand at 1884.090 kb on - strand, within B158DRAFT_1789
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 1,881,344 - B158DRAFT_1786 0.75 -0.3 1,881,395 - B158DRAFT_1786 0.78 +0.0 1,881,411 + B158DRAFT_1786 0.78 -0.3 1,881,423 + B158DRAFT_1786 0.79 +0.1 1,881,478 + B158DRAFT_1786 0.82 +1.7 1,881,587 - B158DRAFT_1786 0.86 -0.7 1,881,587 - B158DRAFT_1786 0.86 +0.2 1,881,623 + B158DRAFT_1786 0.88 -0.3 1,881,666 + +0.1 1,881,690 + -0.0 1,881,698 - -0.2 1,881,719 + -1.6 1,881,727 - -1.6 1,881,727 - -0.1 1,881,747 + +0.3 1,881,770 - +0.3 1,881,778 - -0.4 1,881,883 + -0.6 1,881,912 + +0.1 1,881,966 - +0.2 1,881,968 + -0.4 1,881,968 + -0.2 1,881,976 - -0.8 1,882,042 - -0.7 1,882,076 + +0.2 1,882,114 + +0.1 1,882,149 + -0.2 1,882,210 - -0.3 1,882,234 + -0.3 1,882,234 + +0.4 1,882,234 + -0.5 1,882,234 + -0.5 1,882,234 + -0.4 1,882,234 + -0.5 1,882,234 + -0.1 1,882,234 + -0.1 1,882,234 + +0.6 1,882,234 + -0.6 1,882,234 + +0.3 1,882,234 + -0.5 1,882,234 + -0.5 1,882,234 + -0.4 1,882,234 + -0.1 1,882,242 - +0.4 1,882,242 - -1.1 1,882,242 - +0.3 1,882,242 - +0.7 1,882,242 - +0.2 1,882,242 - +0.3 1,882,242 - -0.3 1,882,242 - -0.0 1,882,242 - +0.8 1,882,242 - +0.1 1,882,242 - -0.2 1,882,242 - -0.9 1,882,242 - -1.0 1,882,242 - -0.3 1,882,242 - -0.6 1,882,242 - -0.7 1,882,242 - -0.6 1,882,242 - +0.5 1,882,242 - +0.2 1,882,242 - -0.6 1,882,268 + -1.1 1,882,302 + -1.6 1,882,302 + -0.8 1,882,302 + +0.2 1,882,308 + +0.9 1,882,310 - -1.0 1,882,310 - -0.3 1,882,310 - +0.7 1,882,310 - +0.0 1,882,310 - +0.3 1,882,323 - +0.5 1,882,331 + +0.5 1,882,339 + +0.3 1,882,348 + -0.2 1,882,357 - -1.2 1,882,461 - B158DRAFT_1787 0.16 -1.1 1,882,627 - B158DRAFT_1787 0.37 -0.5 1,882,656 + B158DRAFT_1787 0.41 -0.2 1,882,718 + B158DRAFT_1787 0.49 +0.7 1,882,754 + B158DRAFT_1787 0.54 -0.4 1,882,754 + B158DRAFT_1787 0.54 -0.1 1,882,754 + B158DRAFT_1787 0.54 -3.1 1,882,762 - B158DRAFT_1787 0.55 -2.9 1,882,762 - B158DRAFT_1787 0.55 +0.5 1,882,793 + B158DRAFT_1787 0.59 -0.2 1,882,891 + B158DRAFT_1787 0.71 -0.3 1,882,969 + B158DRAFT_1787 0.81 -0.7 1,882,969 + B158DRAFT_1787 0.81 -0.2 1,882,977 - B158DRAFT_1787 0.82 +0.2 1,883,110 - -0.4 1,883,119 - -0.5 1,883,155 - -1.3 1,883,155 - +0.0 1,883,241 - -1.0 1,883,276 + -0.4 1,883,453 - B158DRAFT_1788 0.43 -2.9 1,883,615 + B158DRAFT_1788 0.75 -0.0 1,883,755 - -0.1 1,884,090 - B158DRAFT_1789 0.51 -0.7
Or see this region's nucleotide sequence