Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1787

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1786 and B158DRAFT_1787 are separated by 455 nucleotidesB158DRAFT_1787 and B158DRAFT_1788 are separated by 122 nucleotidesB158DRAFT_1788 and B158DRAFT_1789 are separated by 81 nucleotides B158DRAFT_1786: B158DRAFT_1786 - Outer membrane receptor proteins, mostly Fe transport, at 1,879,688 to 1,881,883 _1786 B158DRAFT_1787: B158DRAFT_1787 - hypothetical protein, at 1,882,339 to 1,883,112 _1787 B158DRAFT_1788: B158DRAFT_1788 - hypothetical protein, at 1,883,235 to 1,883,741 _1788 B158DRAFT_1789: B158DRAFT_1789 - hypothetical protein, at 1,883,823 to 1,884,341 _1789 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -3 -2 -1 0 1at 1881.344 kb on - strand, within B158DRAFT_1786at 1881.395 kb on - strand, within B158DRAFT_1786at 1881.411 kb on + strand, within B158DRAFT_1786at 1881.423 kb on + strand, within B158DRAFT_1786at 1881.478 kb on + strand, within B158DRAFT_1786at 1881.587 kb on - strand, within B158DRAFT_1786at 1881.587 kb on - strand, within B158DRAFT_1786at 1881.623 kb on + strand, within B158DRAFT_1786at 1881.666 kb on + strandat 1881.690 kb on + strandat 1881.698 kb on - strandat 1881.719 kb on + strandat 1881.727 kb on - strandat 1881.727 kb on - strandat 1881.747 kb on + strandat 1881.770 kb on - strandat 1881.778 kb on - strandat 1881.883 kb on + strandat 1881.912 kb on + strandat 1881.966 kb on - strandat 1881.968 kb on + strandat 1881.968 kb on + strandat 1881.976 kb on - strandat 1882.042 kb on - strandat 1882.076 kb on + strandat 1882.114 kb on + strandat 1882.149 kb on + strandat 1882.210 kb on - strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.234 kb on + strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.242 kb on - strandat 1882.268 kb on + strandat 1882.302 kb on + strandat 1882.302 kb on + strandat 1882.302 kb on + strandat 1882.308 kb on + strandat 1882.310 kb on - strandat 1882.310 kb on - strandat 1882.310 kb on - strandat 1882.310 kb on - strandat 1882.310 kb on - strandat 1882.323 kb on - strandat 1882.331 kb on + strandat 1882.339 kb on + strandat 1882.348 kb on + strandat 1882.357 kb on - strandat 1882.461 kb on - strand, within B158DRAFT_1787at 1882.627 kb on - strand, within B158DRAFT_1787at 1882.656 kb on + strand, within B158DRAFT_1787at 1882.718 kb on + strand, within B158DRAFT_1787at 1882.754 kb on + strand, within B158DRAFT_1787at 1882.754 kb on + strand, within B158DRAFT_1787at 1882.754 kb on + strand, within B158DRAFT_1787at 1882.762 kb on - strand, within B158DRAFT_1787at 1882.762 kb on - strand, within B158DRAFT_1787at 1882.793 kb on + strand, within B158DRAFT_1787at 1882.891 kb on + strand, within B158DRAFT_1787at 1882.969 kb on + strand, within B158DRAFT_1787at 1882.969 kb on + strand, within B158DRAFT_1787at 1882.977 kb on - strand, within B158DRAFT_1787at 1883.110 kb on - strandat 1883.119 kb on - strandat 1883.155 kb on - strandat 1883.155 kb on - strandat 1883.241 kb on - strandat 1883.276 kb on + strandat 1883.453 kb on - strand, within B158DRAFT_1788at 1883.615 kb on + strand, within B158DRAFT_1788at 1883.755 kb on - strandat 1884.090 kb on - strand, within B158DRAFT_1789

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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1,881,344 - B158DRAFT_1786 0.75 -0.3
1,881,395 - B158DRAFT_1786 0.78 +0.0
1,881,411 + B158DRAFT_1786 0.78 -0.3
1,881,423 + B158DRAFT_1786 0.79 +0.1
1,881,478 + B158DRAFT_1786 0.82 +1.7
1,881,587 - B158DRAFT_1786 0.86 -0.7
1,881,587 - B158DRAFT_1786 0.86 +0.2
1,881,623 + B158DRAFT_1786 0.88 -0.3
1,881,666 + +0.1
1,881,690 + -0.0
1,881,698 - -0.2
1,881,719 + -1.6
1,881,727 - -1.6
1,881,727 - -0.1
1,881,747 + +0.3
1,881,770 - +0.3
1,881,778 - -0.4
1,881,883 + -0.6
1,881,912 + +0.1
1,881,966 - +0.2
1,881,968 + -0.4
1,881,968 + -0.2
1,881,976 - -0.8
1,882,042 - -0.7
1,882,076 + +0.2
1,882,114 + +0.1
1,882,149 + -0.2
1,882,210 - -0.3
1,882,234 + -0.3
1,882,234 + +0.4
1,882,234 + -0.5
1,882,234 + -0.5
1,882,234 + -0.4
1,882,234 + -0.5
1,882,234 + -0.1
1,882,234 + -0.1
1,882,234 + +0.6
1,882,234 + -0.6
1,882,234 + +0.3
1,882,234 + -0.5
1,882,234 + -0.5
1,882,234 + -0.4
1,882,234 + -0.1
1,882,242 - +0.4
1,882,242 - -1.1
1,882,242 - +0.3
1,882,242 - +0.7
1,882,242 - +0.2
1,882,242 - +0.3
1,882,242 - -0.3
1,882,242 - -0.0
1,882,242 - +0.8
1,882,242 - +0.1
1,882,242 - -0.2
1,882,242 - -0.9
1,882,242 - -1.0
1,882,242 - -0.3
1,882,242 - -0.6
1,882,242 - -0.7
1,882,242 - -0.6
1,882,242 - +0.5
1,882,242 - +0.2
1,882,242 - -0.6
1,882,268 + -1.1
1,882,302 + -1.6
1,882,302 + -0.8
1,882,302 + +0.2
1,882,308 + +0.9
1,882,310 - -1.0
1,882,310 - -0.3
1,882,310 - +0.7
1,882,310 - +0.0
1,882,310 - +0.3
1,882,323 - +0.5
1,882,331 + +0.5
1,882,339 + +0.3
1,882,348 + -0.2
1,882,357 - -1.2
1,882,461 - B158DRAFT_1787 0.16 -1.1
1,882,627 - B158DRAFT_1787 0.37 -0.5
1,882,656 + B158DRAFT_1787 0.41 -0.2
1,882,718 + B158DRAFT_1787 0.49 +0.7
1,882,754 + B158DRAFT_1787 0.54 -0.4
1,882,754 + B158DRAFT_1787 0.54 -0.1
1,882,754 + B158DRAFT_1787 0.54 -3.1
1,882,762 - B158DRAFT_1787 0.55 -2.9
1,882,762 - B158DRAFT_1787 0.55 +0.5
1,882,793 + B158DRAFT_1787 0.59 -0.2
1,882,891 + B158DRAFT_1787 0.71 -0.3
1,882,969 + B158DRAFT_1787 0.81 -0.7
1,882,969 + B158DRAFT_1787 0.81 -0.2
1,882,977 - B158DRAFT_1787 0.82 +0.2
1,883,110 - -0.4
1,883,119 - -0.5
1,883,155 - -1.3
1,883,155 - +0.0
1,883,241 - -1.0
1,883,276 + -0.4
1,883,453 - B158DRAFT_1788 0.43 -2.9
1,883,615 + B158DRAFT_1788 0.75 -0.0
1,883,755 - -0.1
1,884,090 - B158DRAFT_1789 0.51 -0.7

Or see this region's nucleotide sequence